Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 RBM23-204ENST00000399922 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.683e-6■□□□□ 8.7
UPF1Q92900 NUP98-207ENST00000429801 2541 ntTSL 1 (best)10.52□□□□□ -0.723e-6■□□□□ 8.7
UPF1Q92900 C5orf22-206ENST00000510659 3117 ntTSL 1 (best)10.43□□□□□ -0.743e-7■□□□□ 8.7
UPF1Q92900 MMS19-202ENST00000355839 3555 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.783e-6■□□□□ 8.7
UPF1Q92900 RBM23-233ENST00000557667 4240 ntTSL 1 (best)9.12□□□□□ -0.953e-6■□□□□ 8.7
UPF1Q92900 SLC20A1-202ENST00000413135 584 ntTSL 58.16□□□□□ -1.13e-6■□□□□ 8.7
UPF1Q92900 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC7.93□□□□□ -1.143e-6■□□□□ 8.7
UPF1Q92900 C5orf22-203ENST00000504866 2447 ntTSL 1 (best)6.99□□□□□ -1.293e-7■□□□□ 8.7
UPF1Q92900 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC8.84□□□□□ -0.993e-14■□□□□ 8.7
UPF1Q92900 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC8.26□□□□□ -1.093e-14■□□□□ 8.7
UPF1Q92900 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.213e-14■□□□□ 8.7
UPF1Q92900 BRD2-211ENST00000482838 759 ntTSL 27□□□□□ -1.293e-7■□□□□ 8.7
UPF1Q92900 ZNF175-202ENST00000436511 488 ntTSL 2 BASIC15.48■□□□□ 0.079e-7■□□□□ 8.6
UPF1Q92900 ZNF175-201ENST00000262259 6535 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.869e-7■□□□□ 8.6
UPF1Q92900 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.331e-7■□□□□ 8.6
UPF1Q92900 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC12.98□□□□□ -0.331e-7■□□□□ 8.6
UPF1Q92900 ADGRG6-203ENST00000367608 6879 ntAPPRIS ALT1 TSL 1 (best) BASIC9.69□□□□□ -0.861e-7■□□□□ 8.6
UPF1Q92900 ADGRG6-201ENST00000230173 7026 ntTSL 1 (best) BASIC8.93□□□□□ -0.981e-7■□□□□ 8.6
UPF1Q92900 FN1-201ENST00000323926 8708 ntTSL 1 (best) BASIC12.51□□□□□ -0.414e-14■□□□□ 8.6
UPF1Q92900 FN1-202ENST00000336916 8435 ntTSL 1 (best) BASIC12.29□□□□□ -0.444e-14■□□□□ 8.6
UPF1Q92900 FN1-206ENST00000359671 8524 ntTSL 5 BASIC12.06□□□□□ -0.484e-14■□□□□ 8.6
UPF1Q92900 FN1-212ENST00000446046 7952 ntTSL 1 (best) BASIC11.81□□□□□ -0.524e-14■□□□□ 8.6
UPF1Q92900 FN1-204ENST00000356005 7846 ntTSL 1 (best) BASIC11.44□□□□□ -0.584e-14■□□□□ 8.6
UPF1Q92900 FN1-211ENST00000443816 7762 ntTSL 1 (best) BASIC11.34□□□□□ -0.594e-14■□□□□ 8.6
UPF1Q92900 FN1-207ENST00000421182 8103 ntTSL 1 (best) BASIC11.19□□□□□ -0.624e-14■□□□□ 8.6
UPF1Q92900 FN1-205ENST00000357867 7898 ntTSL 1 (best) BASIC11.15□□□□□ -0.624e-14■□□□□ 8.6
UPF1Q92900 FN1-203ENST00000354785 8905 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.664e-14■□□□□ 8.6
UPF1Q92900 FN1-227ENST00000498719 2433 ntTSL 210.38□□□□□ -0.754e-14■□□□□ 8.6
UPF1Q92900 FN1-209ENST00000432072 7759 ntTSL 1 (best) BASIC10.22□□□□□ -0.774e-14■□□□□ 8.6
UPF1Q92900 FN1-213ENST00000456923 3720 ntTSL 28.39□□□□□ -1.074e-14■□□□□ 8.6
UPF1Q92900 FN1-224ENST00000492816 9171 ntTSL 55.49□□□□□ -1.534e-14■□□□□ 8.6
UPF1Q92900 UROD-211ENST00000469548 1044 ntTSL 216.93■□□□□ 0.31e-11■□□□□ 8.6
UPF1Q92900 UROD-215ENST00000486699 968 ntTSL 316.71■□□□□ 0.271e-11■□□□□ 8.6
UPF1Q92900 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.28□□□□□ -0.123e-6■□□□□ 8.6
UPF1Q92900 P4HA1-201ENST00000263556 2844 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.243e-6■□□□□ 8.6
UPF1Q92900 P4HA1-204ENST00000394890 2844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.243e-6■□□□□ 8.6
UPF1Q92900 P4HA1-202ENST00000307116 2727 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.33e-6■□□□□ 8.6
UPF1Q92900 P4HA1-203ENST00000373008 2727 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.33e-6■□□□□ 8.6
UPF1Q92900 GLO1-201ENST00000373365 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.031e-31■□□□□ 8.6
UPF1Q92900 GLO1-202ENST00000470973 1939 ntTSL 27.8□□□□□ -1.161e-31■□□□□ 8.6
UPF1Q92900 CDC34-203ENST00000586788 900 ntTSL 235.48■■■■□ 3.275e-7■□□□□ 8.6
UPF1Q92900 SPEN-203ENST00000442985 891 ntTSL 58.84□□□□□ -0.994e-12■□□□□ 8.6
UPF1Q92900 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC24.11■■□□□ 1.452e-14■□□□□ 8.6
UPF1Q92900 RBM33-204ENST00000392755 552 ntAPPRIS ALT2 TSL 418.57■□□□□ 0.562e-14■□□□□ 8.6
UPF1Q92900 SNHG15-209ENST00000584686 541 ntTSL 3 BASIC17.44■□□□□ 0.382e-14■□□□□ 8.6
UPF1Q92900 IPO7-201ENST00000379719 6191 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.542e-14■□□□□ 8.6
UPF1Q92900 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC20.94■□□□□ 0.941e-26■□□□□ 8.6
UPF1Q92900 SNHG1-206ENST00000537925 1487 ntTSL 1 (best) BASIC15.88■□□□□ 0.131e-26■□□□□ 8.6
UPF1Q92900 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC12.23□□□□□ -0.451e-26■□□□□ 8.6
UPF1Q92900 SNHG1-223ENST00000545440 754 ntTSL 2 BASIC10.99□□□□□ -0.651e-26■□□□□ 8.6
UPF1Q92900 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC10.14□□□□□ -0.791e-26■□□□□ 8.6
UPF1Q92900 SNHG1-209ENST00000538654 2768 ntTSL 29.31□□□□□ -0.921e-26■□□□□ 8.6
UPF1Q92900 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC9.05□□□□□ -0.961e-26■□□□□ 8.6
UPF1Q92900 SNHG1-201ENST00000535076 849 ntTSL 28.21□□□□□ -1.11e-26■□□□□ 8.6
UPF1Q92900 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC8.01□□□□□ -1.131e-26■□□□□ 8.6
UPF1Q92900 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.66□□□□□ -1.341e-26■□□□□ 8.6
UPF1Q92900 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC6.32□□□□□ -1.41e-26■□□□□ 8.6
UPF1Q92900 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC6.12□□□□□ -1.431e-26■□□□□ 8.6
UPF1Q92900 EGFL7-205ENST00000490469 456 ntTSL 524.27■■□□□ 1.483e-13■□□□□ 8.5
UPF1Q92900 HNRNPA1-205ENST00000547566 1234 ntTSL 1 (best)24.01■■□□□ 1.432e-25■□□□□ 8.5
UPF1Q92900 HNRNPA1-203ENST00000546500 4121 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.582e-25■□□□□ 8.5
UPF1Q92900 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC11.33□□□□□ -0.62e-25■□□□□ 8.5
UPF1Q92900 HNRNPA1-211ENST00000551665 925 ntTSL 211.23□□□□□ -0.612e-25■□□□□ 8.5
UPF1Q92900 HNRNPA1-214ENST00000551803 372 ntTSL 38.82□□□□□ -12e-25■□□□□ 8.5
UPF1Q92900 ZNF74-205ENST00000420626 591 ntTSL 434.99■■■■□ 3.192e-6■□□□□ 8.5
UPF1Q92900 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.152e-6■□□□□ 8.5
UPF1Q92900 PIK3CB-202ENST00000461451 667 ntTSL 234.72■■■■□ 3.151e-13■□□□□ 8.5
UPF1Q92900 PIK3CB-210ENST00000483968 721 ntTSL 332.74■■■□□ 2.831e-13■□□□□ 8.5
UPF1Q92900 PTP4A2-214ENST00000532289 610 ntTSL 331.69■■■□□ 2.667e-10■□□□□ 8.5
UPF1Q92900 SHMT1-207ENST00000580002 1759 ntTSL 231.27■■■□□ 2.62e-6■□□□□ 8.5
UPF1Q92900 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC30.66■■■□□ 2.52e-6■□□□□ 8.5
UPF1Q92900 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC29.27■■■□□ 2.282e-6■□□□□ 8.5
UPF1Q92900 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.192e-6■□□□□ 8.5
UPF1Q92900 PTP4A2-212ENST00000529477 568 ntTSL 327.83■■■□□ 2.057e-10■□□□□ 8.5
UPF1Q92900 CRK-204ENST00000574295 1391 ntTSL 5 BASIC27.55■■■□□ 22e-6■□□□□ 8.5
UPF1Q92900 NOL3-212ENST00000568199 613 ntTSL 325.55■■□□□ 1.682e-6■□□□□ 8.5
UPF1Q92900 SAE1-208ENST00000597808 570 ntTSL 224.65■■□□□ 1.541e-8■□□□□ 8.5
UPF1Q92900 FLOT2-212ENST00000593158 752 ntTSL 524.6■■□□□ 1.531e-8■□□□□ 8.5
UPF1Q92900 SAE1-205ENST00000594144 723 ntTSL 323.58■■□□□ 1.371e-8■□□□□ 8.5
UPF1Q92900 NOL3-210ENST00000568086 578 ntTSL 422.5■■□□□ 1.192e-6■□□□□ 8.5
UPF1Q92900 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC22.15■■□□□ 1.142e-6■□□□□ 8.5
UPF1Q92900 PTP4A2-209ENST00000526960 793 ntTSL 522.03■■□□□ 1.127e-10■□□□□ 8.5
UPF1Q92900 RNF14-215ENST00000514620 562 ntTSL 420.27■□□□□ 0.842e-6■□□□□ 8.5
UPF1Q92900 FLOT2-211ENST00000586827 1069 ntTSL 519.48■□□□□ 0.711e-8■□□□□ 8.5
UPF1Q92900 RN7SL2-201ENST00000490232 300 ntBASIC18.19■□□□□ 0.51e-8■□□□□ 8.5
UPF1Q92900 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.04■□□□□ 0.482e-6■□□□□ 8.5
UPF1Q92900 PTP4A2-211ENST00000528840 456 ntTSL 217.19■□□□□ 0.347e-10■□□□□ 8.5
UPF1Q92900 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.332e-6■□□□□ 8.5
UPF1Q92900 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.322e-6■□□□□ 8.5
UPF1Q92900 PIK3CB-204ENST00000462898 4747 ntTSL 516.84■□□□□ 0.291e-13■□□□□ 8.5
UPF1Q92900 PDE4DIP-216ENST00000491426 670 ntTSL 216.51■□□□□ 0.232e-6■□□□□ 8.5
UPF1Q92900 FLOT2-203ENST00000465427 746 ntTSL 516.45■□□□□ 0.221e-8■□□□□ 8.5
UPF1Q92900 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.38■□□□□ 0.212e-6■□□□□ 8.5
UPF1Q92900 CCSAP-204ENST00000483092 3492 ntTSL 1 (best)16.04■□□□□ 0.162e-6■□□□□ 8.5
UPF1Q92900 PTP4A2-216ENST00000534796 900 ntTSL 315.7■□□□□ 0.17e-10■□□□□ 8.5
UPF1Q92900 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.012e-6■□□□□ 8.5
UPF1Q92900 AL627171.2-201ENST00000635177 1090 ntTSL 5 BASIC14.83□□□□□ -0.041e-8■□□□□ 8.5
UPF1Q92900 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.052e-6■□□□□ 8.5
UPF1Q92900 AL627171.2-202ENST00000634923 923 ntTSL 5 BASIC13.98□□□□□ -0.171e-8■□□□□ 8.5
UPF1Q92900 PTP4A2-208ENST00000524384 663 ntTSL 513.55□□□□□ -0.247e-10■□□□□ 8.5
Retrieved 100 of 15,879 protein–RNA pairs in 53 ms