Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 NBR1-201ENST00000341165 4656 ntAPPRIS P3 TSL 1 (best) BASIC8.43□□□□□ -1.066e-13■□□□□ 8.1
DDX55Q8NHQ9 ORMDL3-205ENST00000581284 561 ntTSL 517.18■□□□□ 0.341e-56■□□□□ 8
DDX55Q8NHQ9 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.211e-56■□□□□ 8
DDX55Q8NHQ9 DVL1-206ENST00000632445 785 ntTSL 530.81■■■□□ 2.523e-7■□□□□ 8
DDX55Q8NHQ9 H3F3B-202ENST00000586270 468 ntTSL 230.13■■■□□ 2.412e-9■□□□□ 8
DDX55Q8NHQ9 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC29.53■■■□□ 2.323e-7■□□□□ 8
DDX55Q8NHQ9 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC29.53■■■□□ 2.323e-7■□□□□ 8
DDX55Q8NHQ9 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC29.53■■■□□ 2.323e-7■□□□□ 8
DDX55Q8NHQ9 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC26.64■■□□□ 1.863e-7■□□□□ 8
DDX55Q8NHQ9 KRTCAP2-206ENST00000487350 785 ntTSL 1 (best)26.48■■□□□ 1.833e-7■□□□□ 8
DDX55Q8NHQ9 SNRPA-203ENST00000597353 538 ntTSL 526.42■■□□□ 1.823e-7■□□□□ 8
DDX55Q8NHQ9 SNRPA-211ENST00000601545 695 ntTSL 525.93■■□□□ 1.743e-7■□□□□ 8
DDX55Q8NHQ9 ZNF692-220ENST00000496411 1064 ntTSL 325.74■■□□□ 1.711e-13■□□□□ 8
DDX55Q8NHQ9 SNRPA-204ENST00000598452 679 ntTSL 223.58■■□□□ 1.373e-7■□□□□ 8
DDX55Q8NHQ9 STK11-208ENST00000591133 1011 ntTSL 223.47■■□□□ 1.353e-7■□□□□ 8
DDX55Q8NHQ9 LUC7L-211ENST00000442701 423 ntTSL 323.08■■□□□ 1.293e-7■□□□□ 8
DDX55Q8NHQ9 LUC7L-215ENST00000468732 573 ntTSL 223.08■■□□□ 1.293e-7■□□□□ 8
DDX55Q8NHQ9 SNRPA-206ENST00000599362 555 ntTSL 223.07■■□□□ 1.283e-7■□□□□ 8
DDX55Q8NHQ9 SNRPA-205ENST00000598923 952 ntTSL 222.82■■□□□ 1.243e-7■□□□□ 8
DDX55Q8NHQ9 ZNF692-207ENST00000468455 644 ntTSL 522.08■■□□□ 1.131e-13■□□□□ 8
DDX55Q8NHQ9 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.052e-9■□□□□ 8
DDX55Q8NHQ9 H3F3B-207ENST00000589417 575 ntTSL 221.4■■□□□ 1.022e-9■□□□□ 8
DDX55Q8NHQ9 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.943e-7■□□□□ 8
DDX55Q8NHQ9 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.943e-7■□□□□ 8
DDX55Q8NHQ9 OAZ1-201ENST00000581150 1131 ntTSL 520.71■□□□□ 0.912e-28■□□□□ 8
DDX55Q8NHQ9 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.892e-9■□□□□ 8
DDX55Q8NHQ9 POR-224ENST00000496888 939 ntTSL 220.57■□□□□ 0.883e-7■□□□□ 8
DDX55Q8NHQ9 SNRPA-210ENST00000601393 969 ntTSL 320.47■□□□□ 0.873e-7■□□□□ 8
DDX55Q8NHQ9 OAZ1-209ENST00000592787 857 ntTSL 219.8■□□□□ 0.762e-28■□□□□ 8
DDX55Q8NHQ9 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.65■□□□□ 0.743e-7■□□□□ 8
DDX55Q8NHQ9 KRTCAP2-205ENST00000482246 414 ntTSL 319.56■□□□□ 0.723e-7■□□□□ 8
DDX55Q8NHQ9 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.523e-7■□□□□ 8
DDX55Q8NHQ9 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC18.24■□□□□ 0.513e-7■□□□□ 8
DDX55Q8NHQ9 STK11-206ENST00000586358 770 ntTSL 518.24■□□□□ 0.513e-7■□□□□ 8
DDX55Q8NHQ9 POR-221ENST00000487247 853 ntTSL 218.03■□□□□ 0.483e-7■□□□□ 8
DDX55Q8NHQ9 POR-223ENST00000495770 559 ntTSL 218.03■□□□□ 0.483e-7■□□□□ 8
DDX55Q8NHQ9 TIAL1-211ENST00000489822 2222 ntTSL 217.99■□□□□ 0.473e-7■□□□□ 8
DDX55Q8NHQ9 SNRPA-208ENST00000600456 592 ntTSL 316.64■□□□□ 0.253e-7■□□□□ 8
DDX55Q8NHQ9 SNRPA-209ENST00000601253 519 ntTSL 316.64■□□□□ 0.253e-7■□□□□ 8
DDX55Q8NHQ9 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.253e-7■□□□□ 8
DDX55Q8NHQ9 SNRPA-207ENST00000599570 925 ntTSL 316.58■□□□□ 0.243e-7■□□□□ 8
DDX55Q8NHQ9 H3F3B-205ENST00000587171 586 ntTSL 216.3■□□□□ 0.22e-9■□□□□ 8
DDX55Q8NHQ9 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.05■□□□□ 0.163e-7■□□□□ 8
DDX55Q8NHQ9 TIAL1-213ENST00000497671 2321 ntTSL 1 (best)16.02■□□□□ 0.153e-7■□□□□ 8
DDX55Q8NHQ9 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.133e-7■□□□□ 8
DDX55Q8NHQ9 ZNF692-216ENST00000491971 805 ntTSL 215.55■□□□□ 0.081e-13■□□□□ 8
DDX55Q8NHQ9 KRTCAP2-204ENST00000471891 578 ntTSL 314.78□□□□□ -0.043e-7■□□□□ 8
DDX55Q8NHQ9 KRTCAP2-210ENST00000497317 477 ntTSL 314.25□□□□□ -0.133e-7■□□□□ 8
DDX55Q8NHQ9 DVL1-205ENST00000631679 778 ntTSL 514.1□□□□□ -0.153e-7■□□□□ 8
DDX55Q8NHQ9 KRTCAP2-209ENST00000492892 430 ntTSL 314.02□□□□□ -0.173e-7■□□□□ 8
DDX55Q8NHQ9 POFUT2-202ENST00000334538 3077 ntTSL 1 (best)13.9□□□□□ -0.183e-7■□□□□ 8
DDX55Q8NHQ9 POFUT2-203ENST00000349485 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.253e-7■□□□□ 8
DDX55Q8NHQ9 POFUT2-213ENST00000612472 2959 ntTSL 5 BASIC13.46□□□□□ -0.253e-7■□□□□ 8
DDX55Q8NHQ9 KRTCAP2-208ENST00000491084 598 ntTSL 313.21□□□□□ -0.293e-7■□□□□ 8
DDX55Q8NHQ9 POFUT2-208ENST00000471540 3176 ntTSL 512.82□□□□□ -0.363e-7■□□□□ 8
DDX55Q8NHQ9 KRTCAP2-207ENST00000490672 3264 ntTSL 212.79□□□□□ -0.363e-7■□□□□ 8
DDX55Q8NHQ9 KEL-207ENST00000478969 351 ntTSL 312.37□□□□□ -0.433e-7■□□□□ 8
DDX55Q8NHQ9 DEF8-229ENST00000617948 3883 ntAPPRIS P4 TSL 5 BASIC12.24□□□□□ -0.453e-7■□□□□ 8
DDX55Q8NHQ9 H3F3B-204ENST00000586607 551 ntAPPRIS P1 TSL 4 BASIC11.86□□□□□ -0.512e-9■□□□□ 8
DDX55Q8NHQ9 DEF8-227ENST00000570182 3549 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.543e-7■□□□□ 8
DDX55Q8NHQ9 DEF8-201ENST00000268676 3725 ntTSL 2 BASIC11.53□□□□□ -0.563e-7■□□□□ 8
DDX55Q8NHQ9 AC016723.1-202ENST00000436982 643 ntTSL 5 BASIC11.29□□□□□ -0.63e-7■□□□□ 8
DDX55Q8NHQ9 KEL-205ENST00000470850 705 ntTSL 211.11□□□□□ -0.633e-7■□□□□ 8
DDX55Q8NHQ9 SF1-219ENST00000496969 455 ntTSL 310.33□□□□□ -0.763e-7■□□□□ 8
DDX55Q8NHQ9 SF1-218ENST00000489544 584 ntTSL 29.91□□□□□ -0.823e-7■□□□□ 8
DDX55Q8NHQ9 TIAL1-205ENST00000436547 1401 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.993e-7■□□□□ 8
DDX55Q8NHQ9 TIAL1-207ENST00000463089 907 ntTSL 58.81□□□□□ -13e-7■□□□□ 8
DDX55Q8NHQ9 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC8.11□□□□□ -1.113e-7■□□□□ 8
DDX55Q8NHQ9 MPC1-205ENST00000487218 918 ntTSL 57.51□□□□□ -1.213e-7■□□□□ 8
DDX55Q8NHQ9 TIAL1-209ENST00000470781 1727 ntTSL 26.67□□□□□ -1.343e-7■□□□□ 8
DDX55Q8NHQ9 SF1-217ENST00000486960 719 ntTSL 25.86□□□□□ -1.473e-7■□□□□ 8
DDX55Q8NHQ9 MPC1-203ENST00000366868 572 ntTSL 35.68□□□□□ -1.53e-7■□□□□ 8
DDX55Q8NHQ9 KRTCAP2-202ENST00000461136 271 ntTSL 35.49□□□□□ -1.533e-7■□□□□ 8
DDX55Q8NHQ9 KRTCAP2-203ENST00000463527 463 ntTSL 35.49□□□□□ -1.533e-7■□□□□ 8
DDX55Q8NHQ9 MPC1-204ENST00000475708 651 ntTSL 53.17□□□□□ -1.93e-7■□□□□ 8
DDX55Q8NHQ9 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.173e-7■□□□□ 8
DDX55Q8NHQ9 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC22.31■■□□□ 1.163e-7■□□□□ 8
DDX55Q8NHQ9 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.043e-7■□□□□ 8
DDX55Q8NHQ9 RPS13-205ENST00000527571 777 ntTSL 221.37■■□□□ 1.013e-7■□□□□ 8
DDX55Q8NHQ9 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.833e-7■□□□□ 8
DDX55Q8NHQ9 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.773e-7■□□□□ 8
DDX55Q8NHQ9 RPS13-206ENST00000528074 583 ntTSL 219.63■□□□□ 0.733e-7■□□□□ 8
DDX55Q8NHQ9 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.683e-7■□□□□ 8
DDX55Q8NHQ9 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.673e-7■□□□□ 8
DDX55Q8NHQ9 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.663e-7■□□□□ 8
DDX55Q8NHQ9 RPS13-210ENST00000534329 568 ntTSL 216.87■□□□□ 0.293e-7■□□□□ 8
DDX55Q8NHQ9 ATP5L-204ENST00000529460 457 ntTSL 313.46□□□□□ -0.253e-7■□□□□ 8
DDX55Q8NHQ9 DAG1-218ENST00000515359 5576 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.283e-7■□□□□ 8
DDX55Q8NHQ9 ATP5L-207ENST00000533172 336 ntTSL 212.58□□□□□ -0.43e-7■□□□□ 8
DDX55Q8NHQ9 LASP1-204ENST00000435347 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.428e-17■□□□□ 8
DDX55Q8NHQ9 LASP1-203ENST00000433206 4023 ntTSL 2 BASIC11.87□□□□□ -0.518e-17■□□□□ 8
DDX55Q8NHQ9 CXCL16-205ENST00000576153 1484 ntTSL 211.19□□□□□ -0.623e-7■□□□□ 8
DDX55Q8NHQ9 LASP1-201ENST00000318008 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.638e-17■□□□□ 8
DDX55Q8NHQ9 ATP5L-202ENST00000524422 720 ntTSL 3 BASIC10.53□□□□□ -0.723e-7■□□□□ 8
DDX55Q8NHQ9 FGB-201ENST00000302068 1975 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.773e-7■□□□□ 8
DDX55Q8NHQ9 ATP5L-205ENST00000529770 575 ntTSL 27.72□□□□□ -1.173e-7■□□□□ 8
DDX55Q8NHQ9 ATP5L-206ENST00000529790 900 ntTSL 27.26□□□□□ -1.253e-7■□□□□ 8
DDX55Q8NHQ9 ATP5L-203ENST00000527186 1582 ntTSL 25.21□□□□□ -1.583e-7■□□□□ 8
DDX55Q8NHQ9 TRIM28-204ENST00000594806 861 ntTSL 531.06■■■□□ 2.562e-6■□□□□ 8
DDX55Q8NHQ9 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.132e-6■□□□□ 8
Retrieved 100 of 15,504 protein–RNA pairs in 52.1 ms