Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Smco4Q9JIS3 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smco4Q9JIS3 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smco4Q9JIS3 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smco4Q9JIS3 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smco4Q9JIS3 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smco4Q9JIS3 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Smco4Q9JIS3 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Smco4Q9JIS3 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC17.69■□□□□ 0.42
Smco4Q9JIS3 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Smco4Q9JIS3 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Smco4Q9JIS3 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Smco4Q9JIS3 Gm12504-201ENSMUST00000120860 2231 ntBASIC17.68■□□□□ 0.42
Smco4Q9JIS3 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smco4Q9JIS3 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smco4Q9JIS3 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
Smco4Q9JIS3 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
Smco4Q9JIS3 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smco4Q9JIS3 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smco4Q9JIS3 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smco4Q9JIS3 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Smco4Q9JIS3 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Smco4Q9JIS3 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Smco4Q9JIS3 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC17.67■□□□□ 0.42
Smco4Q9JIS3 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Smco4Q9JIS3 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC17.67■□□□□ 0.42
Smco4Q9JIS3 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Smco4Q9JIS3 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Smco4Q9JIS3 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
Smco4Q9JIS3 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Smco4Q9JIS3 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smco4Q9JIS3 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smco4Q9JIS3 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smco4Q9JIS3 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smco4Q9JIS3 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smco4Q9JIS3 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smco4Q9JIS3 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Smco4Q9JIS3 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smco4Q9JIS3 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smco4Q9JIS3 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC17.65■□□□□ 0.42
Smco4Q9JIS3 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Smco4Q9JIS3 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Smco4Q9JIS3 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Smco4Q9JIS3 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smco4Q9JIS3 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smco4Q9JIS3 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smco4Q9JIS3 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Smco4Q9JIS3 Gm4430-201ENSMUST00000192413 1943 ntBASIC17.64■□□□□ 0.41
Smco4Q9JIS3 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smco4Q9JIS3 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smco4Q9JIS3 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smco4Q9JIS3 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Smco4Q9JIS3 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smco4Q9JIS3 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Smco4Q9JIS3 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smco4Q9JIS3 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smco4Q9JIS3 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smco4Q9JIS3 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smco4Q9JIS3 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smco4Q9JIS3 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Smco4Q9JIS3 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smco4Q9JIS3 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC17.63■□□□□ 0.41
Smco4Q9JIS3 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC17.63■□□□□ 0.41
Smco4Q9JIS3 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Smco4Q9JIS3 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Smco4Q9JIS3 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smco4Q9JIS3 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Smco4Q9JIS3 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smco4Q9JIS3 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Smco4Q9JIS3 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Smco4Q9JIS3 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smco4Q9JIS3 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smco4Q9JIS3 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smco4Q9JIS3 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Smco4Q9JIS3 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Smco4Q9JIS3 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Smco4Q9JIS3 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smco4Q9JIS3 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Smco4Q9JIS3 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smco4Q9JIS3 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Smco4Q9JIS3 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Smco4Q9JIS3 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC17.59■□□□□ 0.41
Smco4Q9JIS3 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Smco4Q9JIS3 Gm27322-201ENSMUST00000184007 104 ntBASIC17.59■□□□□ 0.41
Smco4Q9JIS3 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Smco4Q9JIS3 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Smco4Q9JIS3 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Smco4Q9JIS3 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
Smco4Q9JIS3 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smco4Q9JIS3 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC17.57■□□□□ 0.4
Smco4Q9JIS3 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Smco4Q9JIS3 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Smco4Q9JIS3 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Smco4Q9JIS3 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smco4Q9JIS3 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smco4Q9JIS3 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC17.57■□□□□ 0.4
Smco4Q9JIS3 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smco4Q9JIS3 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Smco4Q9JIS3 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smco4Q9JIS3 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms