Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
Ddx56Q9D0R4 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Ddx56Q9D0R4 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Ddx56Q9D0R4 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Ddx56Q9D0R4 Gm22567-201ENSMUST00000175542 342 ntBASIC23.03■■□□□ 1.28
Ddx56Q9D0R4 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Ddx56Q9D0R4 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
Ddx56Q9D0R4 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
Ddx56Q9D0R4 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
Ddx56Q9D0R4 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC23.02■■□□□ 1.28
Ddx56Q9D0R4 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Ddx56Q9D0R4 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC23.02■■□□□ 1.28
Ddx56Q9D0R4 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Ddx56Q9D0R4 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Ddx56Q9D0R4 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
Ddx56Q9D0R4 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
Ddx56Q9D0R4 Gm27502-201ENSMUST00000183495 199 ntBASIC23.01■■□□□ 1.27
Ddx56Q9D0R4 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ddx56Q9D0R4 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ddx56Q9D0R4 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ddx56Q9D0R4 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Ddx56Q9D0R4 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC23■■□□□ 1.27
Ddx56Q9D0R4 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Ddx56Q9D0R4 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
Ddx56Q9D0R4 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC22.99■■□□□ 1.27
Ddx56Q9D0R4 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ddx56Q9D0R4 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ddx56Q9D0R4 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
Ddx56Q9D0R4 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ddx56Q9D0R4 Mir6538-201ENSMUST00000183713 110 ntBASIC22.99■■□□□ 1.27
Ddx56Q9D0R4 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC22.99■■□□□ 1.27
Ddx56Q9D0R4 AC117245.4-201ENSMUST00000217388 1646 ntBASIC22.99■■□□□ 1.27
Ddx56Q9D0R4 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ddx56Q9D0R4 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Ddx56Q9D0R4 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ddx56Q9D0R4 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Ddx56Q9D0R4 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Ddx56Q9D0R4 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC22.99■■□□□ 1.27
Ddx56Q9D0R4 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
Ddx56Q9D0R4 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Ddx56Q9D0R4 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Ddx56Q9D0R4 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
Ddx56Q9D0R4 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Ddx56Q9D0R4 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Ddx56Q9D0R4 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Ddx56Q9D0R4 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Ddx56Q9D0R4 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
Ddx56Q9D0R4 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Ddx56Q9D0R4 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Ddx56Q9D0R4 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Ddx56Q9D0R4 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC22.97■■□□□ 1.27
Ddx56Q9D0R4 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Ddx56Q9D0R4 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
Ddx56Q9D0R4 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC22.97■■□□□ 1.27
Ddx56Q9D0R4 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Ddx56Q9D0R4 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Ddx56Q9D0R4 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
Ddx56Q9D0R4 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Ddx56Q9D0R4 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Ddx56Q9D0R4 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
Ddx56Q9D0R4 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Ddx56Q9D0R4 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddx56Q9D0R4 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Ddx56Q9D0R4 Gm14523-201ENSMUST00000117260 558 ntBASIC22.95■■□□□ 1.26
Ddx56Q9D0R4 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddx56Q9D0R4 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC22.95■■□□□ 1.26
Ddx56Q9D0R4 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC22.94■■□□□ 1.26
Ddx56Q9D0R4 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC22.94■■□□□ 1.26
Ddx56Q9D0R4 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
Ddx56Q9D0R4 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Ddx56Q9D0R4 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
Ddx56Q9D0R4 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Ddx56Q9D0R4 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
Ddx56Q9D0R4 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
Ddx56Q9D0R4 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Ddx56Q9D0R4 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
Ddx56Q9D0R4 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Ddx56Q9D0R4 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Ddx56Q9D0R4 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ddx56Q9D0R4 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ddx56Q9D0R4 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC22.91■■□□□ 1.26
Ddx56Q9D0R4 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC22.91■■□□□ 1.26
Ddx56Q9D0R4 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC22.91■■□□□ 1.26
Ddx56Q9D0R4 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC22.91■■□□□ 1.26
Ddx56Q9D0R4 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ddx56Q9D0R4 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ddx56Q9D0R4 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ddx56Q9D0R4 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ddx56Q9D0R4 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ddx56Q9D0R4 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ddx56Q9D0R4 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ddx56Q9D0R4 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Ddx56Q9D0R4 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC22.89■■□□□ 1.26
Ddx56Q9D0R4 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC22.89■■□□□ 1.25
Ddx56Q9D0R4 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC22.89■■□□□ 1.25
Ddx56Q9D0R4 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC22.89■■□□□ 1.25
Ddx56Q9D0R4 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Ddx56Q9D0R4 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Ddx56Q9D0R4 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Ddx56Q9D0R4 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Retrieved 100 of 76,532 protein–RNA pairs in 67 ms