Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddx28Q9CWT6 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ddx28Q9CWT6 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddx28Q9CWT6 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddx28Q9CWT6 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddx28Q9CWT6 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddx28Q9CWT6 Gm12818-201ENSMUST00000117562 1349 ntBASIC20.28■□□□□ 0.84
Ddx28Q9CWT6 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx28Q9CWT6 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx28Q9CWT6 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx28Q9CWT6 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx28Q9CWT6 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx28Q9CWT6 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Ddx28Q9CWT6 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Ddx28Q9CWT6 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.27■□□□□ 0.84
Ddx28Q9CWT6 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Ddx28Q9CWT6 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddx28Q9CWT6 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC20.27■□□□□ 0.84
Ddx28Q9CWT6 AC122317.2-201ENSMUST00000218708 1248 ntBASIC20.27■□□□□ 0.84
Ddx28Q9CWT6 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddx28Q9CWT6 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Ddx28Q9CWT6 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ddx28Q9CWT6 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
Ddx28Q9CWT6 Gm45364-201ENSMUST00000210883 159 ntBASIC20.26■□□□□ 0.83
Ddx28Q9CWT6 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ddx28Q9CWT6 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Ddx28Q9CWT6 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
Ddx28Q9CWT6 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.25■□□□□ 0.83
Ddx28Q9CWT6 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.25■□□□□ 0.83
Ddx28Q9CWT6 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx28Q9CWT6 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx28Q9CWT6 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.25■□□□□ 0.83
Ddx28Q9CWT6 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC20.25■□□□□ 0.83
Ddx28Q9CWT6 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx28Q9CWT6 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Ddx28Q9CWT6 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx28Q9CWT6 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx28Q9CWT6 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx28Q9CWT6 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx28Q9CWT6 AC153911.1-201ENSMUST00000220378 758 ntBASIC20.24■□□□□ 0.83
Ddx28Q9CWT6 AC167019.3-201ENSMUST00000228225 1266 ntBASIC20.24■□□□□ 0.83
Ddx28Q9CWT6 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx28Q9CWT6 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx28Q9CWT6 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx28Q9CWT6 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Ddx28Q9CWT6 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx28Q9CWT6 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx28Q9CWT6 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ddx28Q9CWT6 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ddx28Q9CWT6 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx28Q9CWT6 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Ddx28Q9CWT6 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx28Q9CWT6 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx28Q9CWT6 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Ddx28Q9CWT6 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Ddx28Q9CWT6 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Ddx28Q9CWT6 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx28Q9CWT6 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Ddx28Q9CWT6 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx28Q9CWT6 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Ddx28Q9CWT6 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx28Q9CWT6 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.21■□□□□ 0.83
Ddx28Q9CWT6 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx28Q9CWT6 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx28Q9CWT6 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx28Q9CWT6 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx28Q9CWT6 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Ddx28Q9CWT6 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Ddx28Q9CWT6 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx28Q9CWT6 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx28Q9CWT6 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.2■□□□□ 0.82
Ddx28Q9CWT6 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ddx28Q9CWT6 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.19■□□□□ 0.82
Ddx28Q9CWT6 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ddx28Q9CWT6 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ddx28Q9CWT6 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ddx28Q9CWT6 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ddx28Q9CWT6 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.19■□□□□ 0.82
Ddx28Q9CWT6 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx28Q9CWT6 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.18■□□□□ 0.82
Ddx28Q9CWT6 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Ddx28Q9CWT6 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx28Q9CWT6 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx28Q9CWT6 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx28Q9CWT6 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx28Q9CWT6 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx28Q9CWT6 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Ddx28Q9CWT6 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx28Q9CWT6 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx28Q9CWT6 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx28Q9CWT6 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Ddx28Q9CWT6 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx28Q9CWT6 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx28Q9CWT6 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx28Q9CWT6 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Ddx28Q9CWT6 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Ddx28Q9CWT6 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC20.14■□□□□ 0.81
Ddx28Q9CWT6 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.14■□□□□ 0.81
Ddx28Q9CWT6 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Ddx28Q9CWT6 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 137.5 ms