Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Use1Q9CQ56 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Use1Q9CQ56 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Use1Q9CQ56 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Use1Q9CQ56 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Use1Q9CQ56 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Use1Q9CQ56 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Use1Q9CQ56 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.65■□□□□ 0.9
Use1Q9CQ56 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC20.65■□□□□ 0.9
Use1Q9CQ56 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Use1Q9CQ56 Terc-201ENSMUST00000082862 423 ntBASIC20.65■□□□□ 0.9
Use1Q9CQ56 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Use1Q9CQ56 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Use1Q9CQ56 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Use1Q9CQ56 Gm28731-201ENSMUST00000185564 1569 ntBASIC20.64■□□□□ 0.9
Use1Q9CQ56 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Use1Q9CQ56 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Use1Q9CQ56 Gm45364-201ENSMUST00000210883 159 ntBASIC20.64■□□□□ 0.89
Use1Q9CQ56 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Use1Q9CQ56 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Use1Q9CQ56 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Use1Q9CQ56 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
Use1Q9CQ56 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Use1Q9CQ56 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Use1Q9CQ56 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.63■□□□□ 0.89
Use1Q9CQ56 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Use1Q9CQ56 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Use1Q9CQ56 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Use1Q9CQ56 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Use1Q9CQ56 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Use1Q9CQ56 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Use1Q9CQ56 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Use1Q9CQ56 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Use1Q9CQ56 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Use1Q9CQ56 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Use1Q9CQ56 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Use1Q9CQ56 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Use1Q9CQ56 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Use1Q9CQ56 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Use1Q9CQ56 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Use1Q9CQ56 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Use1Q9CQ56 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Use1Q9CQ56 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC20.61■□□□□ 0.89
Use1Q9CQ56 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Use1Q9CQ56 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Use1Q9CQ56 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Use1Q9CQ56 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.6■□□□□ 0.89
Use1Q9CQ56 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Use1Q9CQ56 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Use1Q9CQ56 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Use1Q9CQ56 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Use1Q9CQ56 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.59■□□□□ 0.89
Use1Q9CQ56 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Use1Q9CQ56 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Use1Q9CQ56 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Use1Q9CQ56 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Use1Q9CQ56 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Use1Q9CQ56 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Use1Q9CQ56 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Use1Q9CQ56 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Use1Q9CQ56 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Use1Q9CQ56 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Use1Q9CQ56 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.56■□□□□ 0.88
Use1Q9CQ56 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Use1Q9CQ56 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Use1Q9CQ56 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Use1Q9CQ56 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Use1Q9CQ56 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
Use1Q9CQ56 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Use1Q9CQ56 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Use1Q9CQ56 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Use1Q9CQ56 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Use1Q9CQ56 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Use1Q9CQ56 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Use1Q9CQ56 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Use1Q9CQ56 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Use1Q9CQ56 AC167019.3-201ENSMUST00000228225 1266 ntBASIC20.53■□□□□ 0.88
Use1Q9CQ56 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.53■□□□□ 0.88
Use1Q9CQ56 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Use1Q9CQ56 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Use1Q9CQ56 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Use1Q9CQ56 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC20.52■□□□□ 0.88
Use1Q9CQ56 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC20.52■□□□□ 0.88
Use1Q9CQ56 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Use1Q9CQ56 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Use1Q9CQ56 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC20.52■□□□□ 0.87
Use1Q9CQ56 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Use1Q9CQ56 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.51■□□□□ 0.87
Use1Q9CQ56 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Use1Q9CQ56 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Use1Q9CQ56 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
Use1Q9CQ56 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Use1Q9CQ56 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Use1Q9CQ56 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Use1Q9CQ56 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Use1Q9CQ56 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Use1Q9CQ56 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Use1Q9CQ56 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Use1Q9CQ56 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Use1Q9CQ56 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms