Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC23.76■■□□□ 1.39
VRK3Q8IV63 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
VRK3Q8IV63 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.76■■□□□ 1.39
VRK3Q8IV63 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
VRK3Q8IV63 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
VRK3Q8IV63 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VRK3Q8IV63 AC026202.3-201ENST00000600805 1127 ntBASIC23.75■■□□□ 1.39
VRK3Q8IV63 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.75■■□□□ 1.39
VRK3Q8IV63 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VRK3Q8IV63 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.75■■□□□ 1.39
VRK3Q8IV63 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VRK3Q8IV63 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.74■■□□□ 1.39
VRK3Q8IV63 RAP2CP1-202ENST00000605179 643 ntBASIC23.74■■□□□ 1.39
VRK3Q8IV63 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.74■■□□□ 1.39
VRK3Q8IV63 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
VRK3Q8IV63 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.74■■□□□ 1.39
VRK3Q8IV63 AC009831.1-201ENST00000580420 1582 ntBASIC23.74■■□□□ 1.39
VRK3Q8IV63 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VRK3Q8IV63 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.73■■□□□ 1.39
VRK3Q8IV63 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.73■■□□□ 1.39
VRK3Q8IV63 AC145676.1-201ENST00000514988 2004 ntBASIC23.72■■□□□ 1.39
VRK3Q8IV63 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
VRK3Q8IV63 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
VRK3Q8IV63 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC23.72■■□□□ 1.39
VRK3Q8IV63 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
VRK3Q8IV63 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VRK3Q8IV63 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
VRK3Q8IV63 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
VRK3Q8IV63 DUSP8P4-201ENST00000399538 1761 ntBASIC23.7■■□□□ 1.39
VRK3Q8IV63 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
VRK3Q8IV63 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
VRK3Q8IV63 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
VRK3Q8IV63 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
VRK3Q8IV63 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
VRK3Q8IV63 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
VRK3Q8IV63 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
VRK3Q8IV63 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
VRK3Q8IV63 AC133552.2-201ENST00000619106 1032 ntBASIC23.69■■□□□ 1.38
VRK3Q8IV63 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
VRK3Q8IV63 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.69■■□□□ 1.38
VRK3Q8IV63 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.69■■□□□ 1.38
VRK3Q8IV63 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
VRK3Q8IV63 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
VRK3Q8IV63 U85056.1-201ENST00000616429 682 ntBASIC23.68■■□□□ 1.38
VRK3Q8IV63 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
VRK3Q8IV63 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
VRK3Q8IV63 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
VRK3Q8IV63 AC010501.1-201ENST00000606270 1962 ntBASIC23.67■■□□□ 1.38
VRK3Q8IV63 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
VRK3Q8IV63 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
VRK3Q8IV63 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
VRK3Q8IV63 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
VRK3Q8IV63 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
VRK3Q8IV63 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
VRK3Q8IV63 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.67■■□□□ 1.38
VRK3Q8IV63 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.67■■□□□ 1.38
VRK3Q8IV63 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
VRK3Q8IV63 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
VRK3Q8IV63 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
VRK3Q8IV63 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.66■■□□□ 1.38
VRK3Q8IV63 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.66■■□□□ 1.38
VRK3Q8IV63 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC23.66■■□□□ 1.38
VRK3Q8IV63 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
VRK3Q8IV63 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
VRK3Q8IV63 AC096887.2-201ENST00000623443 1957 ntBASIC23.65■■□□□ 1.38
VRK3Q8IV63 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
VRK3Q8IV63 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.65■■□□□ 1.38
VRK3Q8IV63 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
VRK3Q8IV63 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
VRK3Q8IV63 ABHD17AP5-201ENST00000580133 923 ntBASIC23.65■■□□□ 1.38
VRK3Q8IV63 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC23.65■■□□□ 1.38
VRK3Q8IV63 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
VRK3Q8IV63 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
VRK3Q8IV63 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
VRK3Q8IV63 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
VRK3Q8IV63 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.64■■□□□ 1.37
VRK3Q8IV63 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.63■■□□□ 1.37
VRK3Q8IV63 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
VRK3Q8IV63 HES4-204ENST00000484667 667 ntTSL 3 BASIC23.63■■□□□ 1.37
VRK3Q8IV63 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
VRK3Q8IV63 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
VRK3Q8IV63 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
VRK3Q8IV63 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.62■■□□□ 1.37
VRK3Q8IV63 AL592293.1-201ENST00000502889 1188 ntBASIC23.62■■□□□ 1.37
VRK3Q8IV63 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
VRK3Q8IV63 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
VRK3Q8IV63 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
VRK3Q8IV63 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
VRK3Q8IV63 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
VRK3Q8IV63 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC23.61■■□□□ 1.37
VRK3Q8IV63 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
VRK3Q8IV63 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
VRK3Q8IV63 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
VRK3Q8IV63 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
VRK3Q8IV63 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
VRK3Q8IV63 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
VRK3Q8IV63 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
VRK3Q8IV63 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
VRK3Q8IV63 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
VRK3Q8IV63 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms