Protein–RNA interactions for Protein: P62312

LSM6, U6 snRNA-associated Sm-like protein LSm6, humanhuman

Known RBP Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6P62312 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.28■■□□□ 1
LSM6P62312 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.28■■□□□ 1
LSM6P62312 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
LSM6P62312 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
LSM6P62312 SMPD5-203ENST00000639008 1464 ntBASIC21.27■■□□□ 1
LSM6P62312 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LSM6P62312 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LSM6P62312 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LSM6P62312 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
LSM6P62312 MIR3960-201ENST00000583311 91 ntBASIC21.27■■□□□ 1
LSM6P62312 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LSM6P62312 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
LSM6P62312 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.27■□□□□ 0.99
LSM6P62312 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.26■□□□□ 0.99
LSM6P62312 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
LSM6P62312 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LSM6P62312 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.26■□□□□ 0.99
LSM6P62312 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.26■□□□□ 0.99
LSM6P62312 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
LSM6P62312 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LSM6P62312 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.26■□□□□ 0.99
LSM6P62312 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LSM6P62312 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LSM6P62312 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LSM6P62312 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
LSM6P62312 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.25■□□□□ 0.99
LSM6P62312 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
LSM6P62312 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LSM6P62312 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.24■□□□□ 0.99
LSM6P62312 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LSM6P62312 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LSM6P62312 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
LSM6P62312 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LSM6P62312 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.23■□□□□ 0.99
LSM6P62312 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.23■□□□□ 0.99
LSM6P62312 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LSM6P62312 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.22■□□□□ 0.99
LSM6P62312 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LSM6P62312 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
LSM6P62312 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
LSM6P62312 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LSM6P62312 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LSM6P62312 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LSM6P62312 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.22■□□□□ 0.99
LSM6P62312 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.22■□□□□ 0.99
LSM6P62312 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LSM6P62312 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LSM6P62312 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
LSM6P62312 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.21■□□□□ 0.99
LSM6P62312 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LSM6P62312 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LSM6P62312 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.21■□□□□ 0.99
LSM6P62312 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LSM6P62312 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.21■□□□□ 0.99
LSM6P62312 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.21■□□□□ 0.99
LSM6P62312 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
LSM6P62312 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
LSM6P62312 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.2■□□□□ 0.98
LSM6P62312 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LSM6P62312 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.2■□□□□ 0.98
LSM6P62312 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.2■□□□□ 0.98
LSM6P62312 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
LSM6P62312 AC096887.2-201ENST00000623443 1957 ntBASIC21.19■□□□□ 0.98
LSM6P62312 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.19■□□□□ 0.98
LSM6P62312 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.19■□□□□ 0.98
LSM6P62312 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LSM6P62312 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LSM6P62312 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LSM6P62312 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LSM6P62312 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
LSM6P62312 AC020928.2-201ENST00000588717 2197 ntBASIC21.18■□□□□ 0.98
LSM6P62312 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LSM6P62312 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.18■□□□□ 0.98
LSM6P62312 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LSM6P62312 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.17■□□□□ 0.98
LSM6P62312 GPX1-201ENST00000419349 1106 ntBASIC21.17■□□□□ 0.98
LSM6P62312 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LSM6P62312 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LSM6P62312 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.17■□□□□ 0.98
LSM6P62312 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LSM6P62312 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
LSM6P62312 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.16■□□□□ 0.98
LSM6P62312 RP9P-202ENST00000450133 1212 ntBASIC21.16■□□□□ 0.98
LSM6P62312 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LSM6P62312 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LSM6P62312 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LSM6P62312 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LSM6P62312 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LSM6P62312 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
LSM6P62312 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LSM6P62312 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.15■□□□□ 0.98
LSM6P62312 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LSM6P62312 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LSM6P62312 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
LSM6P62312 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.98
LSM6P62312 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
LSM6P62312 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.14■□□□□ 0.97
LSM6P62312 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LSM6P62312 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LSM6P62312 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms