Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC19.79■□□□□ 0.76
HOXA1P49639 AC068473.5-201ENST00000616428 2072 ntBASIC19.79■□□□□ 0.76
HOXA1P49639 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXA1P49639 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.79■□□□□ 0.76
HOXA1P49639 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.78■□□□□ 0.76
HOXA1P49639 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXA1P49639 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXA1P49639 AC087741.3-201ENST00000624270 1347 ntBASIC19.77■□□□□ 0.76
HOXA1P49639 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
HOXA1P49639 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
HOXA1P49639 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC19.77■□□□□ 0.76
HOXA1P49639 AC044849.2-201ENST00000606596 710 ntBASIC19.77■□□□□ 0.76
HOXA1P49639 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
HOXA1P49639 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXA1P49639 DUSP8P4-201ENST00000399538 1761 ntBASIC19.77■□□□□ 0.76
HOXA1P49639 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.75
HOXA1P49639 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.75
HOXA1P49639 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA1P49639 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA1P49639 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA1P49639 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.76■□□□□ 0.75
HOXA1P49639 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA1P49639 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA1P49639 AC142472.1-201ENST00000612013 1741 ntBASIC19.76■□□□□ 0.75
HOXA1P49639 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA1P49639 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.75■□□□□ 0.75
HOXA1P49639 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA1P49639 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA1P49639 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC19.75■□□□□ 0.75
HOXA1P49639 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC19.75■□□□□ 0.75
HOXA1P49639 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
HOXA1P49639 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA1P49639 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA1P49639 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA1P49639 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA1P49639 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA1P49639 WHAMMP3-201ENST00000611636 1609 ntBASIC19.74■□□□□ 0.75
HOXA1P49639 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA1P49639 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA1P49639 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXA1P49639 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA1P49639 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA1P49639 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.73■□□□□ 0.75
HOXA1P49639 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA1P49639 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC19.73■□□□□ 0.75
HOXA1P49639 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA1P49639 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA1P49639 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.73■□□□□ 0.75
HOXA1P49639 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXA1P49639 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA1P49639 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA1P49639 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA1P49639 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA1P49639 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
HOXA1P49639 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXA1P49639 PEX7-203ENST00000541292 945 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXA1P49639 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HOXA1P49639 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA1P49639 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXA1P49639 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA1P49639 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA1P49639 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA1P49639 AL162393.1-201ENST00000437852 946 ntBASIC19.71■□□□□ 0.75
HOXA1P49639 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA1P49639 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA1P49639 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXA1P49639 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
HOXA1P49639 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXA1P49639 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
HOXA1P49639 BOD1-206ENST00000480951 814 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXA1P49639 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXA1P49639 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
HOXA1P49639 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXA1P49639 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXA1P49639 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXA1P49639 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXA1P49639 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXA1P49639 NRG1-221ENST00000614767 762 ntTSL 5 BASIC19.69■□□□□ 0.74
HOXA1P49639 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXA1P49639 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXA1P49639 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXA1P49639 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
HOXA1P49639 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXA1P49639 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXA1P49639 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC19.68■□□□□ 0.74
HOXA1P49639 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXA1P49639 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXA1P49639 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXA1P49639 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.67■□□□□ 0.74
HOXA1P49639 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXA1P49639 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXA1P49639 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXA1P49639 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXA1P49639 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
HOXA1P49639 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC19.67■□□□□ 0.74
HOXA1P49639 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
HOXA1P49639 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXA1P49639 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HOXA1P49639 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXA1P49639 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms