Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SEMA3DO95025 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SEMA3DO95025 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.14■■□□□ 1.29
SEMA3DO95025 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SEMA3DO95025 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SEMA3DO95025 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SEMA3DO95025 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
SEMA3DO95025 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SEMA3DO95025 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.13■■□□□ 1.29
SEMA3DO95025 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.13■■□□□ 1.29
SEMA3DO95025 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.12■■□□□ 1.29
SEMA3DO95025 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SEMA3DO95025 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
SEMA3DO95025 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.12■■□□□ 1.29
SEMA3DO95025 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
SEMA3DO95025 MIR3960-201ENST00000583311 91 ntBASIC23.12■■□□□ 1.29
SEMA3DO95025 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC23.12■■□□□ 1.29
SEMA3DO95025 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
SEMA3DO95025 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.12■■□□□ 1.29
SEMA3DO95025 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.12■■□□□ 1.29
SEMA3DO95025 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.11■■□□□ 1.29
SEMA3DO95025 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SEMA3DO95025 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SEMA3DO95025 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC23.11■■□□□ 1.29
SEMA3DO95025 SMPD5-203ENST00000639008 1464 ntBASIC23.11■■□□□ 1.29
SEMA3DO95025 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.1■■□□□ 1.29
SEMA3DO95025 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
SEMA3DO95025 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.1■■□□□ 1.29
SEMA3DO95025 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.1■■□□□ 1.29
SEMA3DO95025 ERN1-208ENST00000606895 2068 ntBASIC23.1■■□□□ 1.29
SEMA3DO95025 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
SEMA3DO95025 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
SEMA3DO95025 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.09■■□□□ 1.29
SEMA3DO95025 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SEMA3DO95025 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SEMA3DO95025 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SEMA3DO95025 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SEMA3DO95025 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.08■■□□□ 1.29
SEMA3DO95025 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.08■■□□□ 1.29
SEMA3DO95025 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SEMA3DO95025 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.08■■□□□ 1.29
SEMA3DO95025 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SEMA3DO95025 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SEMA3DO95025 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
SEMA3DO95025 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
SEMA3DO95025 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
SEMA3DO95025 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
SEMA3DO95025 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SEMA3DO95025 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.07■■□□□ 1.28
SEMA3DO95025 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.07■■□□□ 1.28
SEMA3DO95025 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SEMA3DO95025 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SEMA3DO95025 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
SEMA3DO95025 GPX1-201ENST00000419349 1106 ntBASIC23.06■■□□□ 1.28
SEMA3DO95025 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.06■■□□□ 1.28
SEMA3DO95025 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
SEMA3DO95025 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SEMA3DO95025 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SEMA3DO95025 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC23.05■■□□□ 1.28
SEMA3DO95025 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
SEMA3DO95025 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SEMA3DO95025 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SEMA3DO95025 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SEMA3DO95025 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SEMA3DO95025 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.04■■□□□ 1.28
SEMA3DO95025 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SEMA3DO95025 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
SEMA3DO95025 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SEMA3DO95025 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
SEMA3DO95025 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SEMA3DO95025 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.03■■□□□ 1.28
SEMA3DO95025 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.03■■□□□ 1.28
SEMA3DO95025 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
SEMA3DO95025 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.02■■□□□ 1.28
SEMA3DO95025 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SEMA3DO95025 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.01■■□□□ 1.27
SEMA3DO95025 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.01■■□□□ 1.27
SEMA3DO95025 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.01■■□□□ 1.27
SEMA3DO95025 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SEMA3DO95025 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.01■■□□□ 1.27
SEMA3DO95025 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
SEMA3DO95025 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23■■□□□ 1.27
SEMA3DO95025 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23■■□□□ 1.27
SEMA3DO95025 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
SEMA3DO95025 RP9P-202ENST00000450133 1212 ntBASIC23■■□□□ 1.27
SEMA3DO95025 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC23■■□□□ 1.27
SEMA3DO95025 AC096887.2-201ENST00000623443 1957 ntBASIC23■■□□□ 1.27
SEMA3DO95025 AC007029.1-201ENST00000604183 313 ntBASIC22.99■■□□□ 1.27
SEMA3DO95025 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.99■■□□□ 1.27
SEMA3DO95025 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
SEMA3DO95025 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC22.98■■□□□ 1.27
SEMA3DO95025 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SEMA3DO95025 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SEMA3DO95025 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
SEMA3DO95025 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SEMA3DO95025 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SEMA3DO95025 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
SEMA3DO95025 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC22.97■■□□□ 1.27
SEMA3DO95025 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC22.97■■□□□ 1.27
SEMA3DO95025 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC22.97■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms