Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 SKIV2L-206ENST00000470453 455 ntTSL 313.45□□□□□ -0.269e-7■■■■□ 20.2
CDC40O60508 SKIV2L-208ENST00000474839 3378 ntTSL 210.94□□□□□ -0.669e-7■■■■□ 20.2
CDC40O60508 SKIV2L-201ENST00000375394 3894 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.789e-7■■■■□ 20.2
CDC40O60508 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.813e-6■■■■□ 20.1
CDC40O60508 SEPT9-245ENST00000592481 1291 ntTSL 518.91■□□□□ 0.629e-7■■■■□ 20.1
CDC40O60508 SEPT9-221ENST00000588958 879 ntTSL 214.98□□□□□ -0.019e-7■■■■□ 20.1
CDC40O60508 SEPT9-210ENST00000585929 906 ntTSL 413.93□□□□□ -0.189e-7■■■■□ 20.1
CDC40O60508 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC13.67□□□□□ -0.229e-7■■■■□ 20.1
CDC40O60508 SEPT9-212ENST00000586128 752 ntTSL 412.85□□□□□ -0.359e-7■■■■□ 20.1
CDC40O60508 SEPT9-213ENST00000586433 569 ntTSL 411.16□□□□□ -0.629e-7■■■■□ 20.1
CDC40O60508 SEPT9-239ENST00000591704 749 ntTSL 210.85□□□□□ -0.679e-7■■■■□ 20.1
CDC40O60508 SEPT9-234ENST00000590938 611 ntTSL 49.41□□□□□ -0.99e-7■■■■□ 20.1
CDC40O60508 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.56□□□□□ -0.083e-6■■■■□ 20.1
CDC40O60508 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.113e-6■■■■□ 20.1
CDC40O60508 RPTOR-211ENST00000577161 3633 ntTSL 210.16□□□□□ -0.783e-6■■■■□ 20.1
CDC40O60508 F7-204ENST00000473085 558 ntTSL 416.84■□□□□ 0.294e-7■■■■□ 20.1
CDC40O60508 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.71□□□□□ -0.229e-7■■■■□ 20
CDC40O60508 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC22.59■■□□□ 1.215e-6■■■■□ 20
CDC40O60508 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.67■□□□□ 0.95e-6■■■■□ 20
CDC40O60508 SEPT9-229ENST00000590576 583 ntTSL 318.78■□□□□ 0.63e-6■■■■□ 19.9
CDC40O60508 SEPT9-222ENST00000589070 582 ntTSL 317.11■□□□□ 0.333e-6■■■■□ 19.9
CDC40O60508 SEPT9-217ENST00000587237 548 ntTSL 513.36□□□□□ -0.273e-6■■■■□ 19.9
CDC40O60508 SEPT9-240ENST00000591833 576 ntTSL 413.22□□□□□ -0.293e-6■■■■□ 19.9
CDC40O60508 MGRN1-214ENST00000591673 568 ntTSL 411.61□□□□□ -0.552e-6■■■■□ 19.9
CDC40O60508 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.46□□□□□ -0.254e-8■■■■□ 19.9
CDC40O60508 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.37□□□□□ -0.274e-8■■■■□ 19.9
CDC40O60508 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.274e-8■■■■□ 19.9
CDC40O60508 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.32□□□□□ -0.284e-8■■■■□ 19.9
CDC40O60508 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.34e-8■■■■□ 19.9
CDC40O60508 MLXIPL-202ENST00000345114 3079 ntTSL 1 (best)12.51□□□□□ -0.414e-8■■■■□ 19.9
CDC40O60508 SEPT9-227ENST00000590059 670 ntTSL 519.01■□□□□ 0.639e-7■■■■□ 19.9
CDC40O60508 SEPT9-215ENST00000586521 601 ntTSL 415.91■□□□□ 0.149e-7■■■■□ 19.9
CDC40O60508 SEPT9-235ENST00000591020 582 ntTSL 410.15□□□□□ -0.789e-7■■■■□ 19.9
CDC40O60508 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.349e-7■■■■□ 19.8
CDC40O60508 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.299e-7■■■■□ 19.8
CDC40O60508 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.229e-7■■■■□ 19.8
CDC40O60508 ESRRA-206ENST00000539594 747 ntTSL 325.75■■□□□ 1.713e-7■■■■□ 19.8
CDC40O60508 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.433e-7■■■■□ 19.8
CDC40O60508 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.073e-7■■■■□ 19.8
CDC40O60508 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.19■□□□□ 0.183e-7■■■■□ 19.8
CDC40O60508 MON2-205ENST00000547095 5708 ntTSL 1 (best)16.11■□□□□ 0.173e-7■■■■□ 19.8
CDC40O60508 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.79■□□□□ 0.123e-7■■■■□ 19.8
CDC40O60508 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.77■□□□□ 0.113e-7■■■■□ 19.8
CDC40O60508 MON2-214ENST00000641654 10382 ntBASIC11.13□□□□□ -0.633e-7■■■■□ 19.8
CDC40O60508 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.063e-7■■■■□ 19.8
CDC40O60508 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.473e-10■■■■□ 19.8
CDC40O60508 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.81□□□□□ -1.483e-10■■■■□ 19.8
CDC40O60508 EIF4A1-219ENST00000581770 447 ntTSL 212.94□□□□□ -0.342e-7■■■■□ 19.8
CDC40O60508 EIF4A1-235ENST00000584860 1109 ntTSL 312.57□□□□□ -0.42e-7■■■■□ 19.8
CDC40O60508 EIF4A1-205ENST00000577738 531 ntTSL 211.66□□□□□ -0.542e-7■■■■□ 19.8
CDC40O60508 HPCAL1-205ENST00000423674 586 ntTSL 421.1■□□□□ 0.971e-6■■■■□ 19.7
CDC40O60508 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.671e-6■■■■□ 19.7
CDC40O60508 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.111e-6■■■■□ 19.7
CDC40O60508 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.56□□□□□ -0.082e-6■■■■□ 19.7
CDC40O60508 AP003716.1-203ENST00000533670 613 ntTSL 3 BASIC9.67□□□□□ -0.866e-10■■■■□ 19.7
CDC40O60508 RNU6-31P-201ENST00000384388 108 ntBASIC3.7□□□□□ -1.826e-10■■■■□ 19.7
CDC40O60508 RNU6-46P-201ENST00000383860 107 ntBASIC-0.33□□□□□ -2.466e-10■■■■□ 19.7
CDC40O60508 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.447e-7■■■■□ 19.7
CDC40O60508 DHRS3-201ENST00000430996 826 ntTSL 317.18■□□□□ 0.347e-7■■■■□ 19.7
CDC40O60508 DHRS3-203ENST00000482265 1036 ntTSL 313.87□□□□□ -0.197e-7■■■■□ 19.7
CDC40O60508 DHRS3-202ENST00000464917 539 ntTSL 312.27□□□□□ -0.457e-7■■■■□ 19.7
CDC40O60508 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.251e-15■■■■□ 19.6
CDC40O60508 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.39□□□□□ -0.271e-15■■■■□ 19.6
CDC40O60508 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC12.94□□□□□ -0.341e-15■■■■□ 19.6
CDC40O60508 SLC13A5-201ENST00000293800 3176 ntTSL 2 BASIC9.87□□□□□ -0.831e-15■■■■□ 19.6
CDC40O60508 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.08■□□□□ 0.011e-6■■■■□ 19.6
CDC40O60508 SEPT9-203ENST00000427177 3821 ntAPPRIS P4 TSL 1 (best) BASIC11.86□□□□□ -0.511e-6■■■■□ 19.6
CDC40O60508 SEPT9-207ENST00000449803 3996 ntTSL 2 BASIC11.74□□□□□ -0.531e-6■■■■□ 19.6
CDC40O60508 SEPT9-206ENST00000431235 4004 ntTSL 5 BASIC10.97□□□□□ -0.651e-6■■■■□ 19.6
CDC40O60508 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.49■□□□□ 0.239e-7■■■■□ 19.6
CDC40O60508 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.079e-7■■■■□ 19.6
CDC40O60508 SEPT9-205ENST00000427674 3937 ntTSL 1 (best) BASIC10.89□□□□□ -0.679e-7■■■■□ 19.6
CDC40O60508 ARID1A-216ENST00000637465 699 ntTSL 53.88□□□□□ -1.793e-6■■■■□ 19.6
CDC40O60508 F7-203ENST00000444337 564 ntTSL 518.38■□□□□ 0.534e-7■■■■□ 19.5
CDC40O60508 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.014e-7■■■■□ 19.5
CDC40O60508 F7-206ENST00000541084 2873 ntTSL 2 BASIC10.54□□□□□ -0.724e-7■■■■□ 19.5
CDC40O60508 F7-202ENST00000375581 3109 ntAPPRIS P4 TSL 1 (best) BASIC10.16□□□□□ -0.784e-7■■■■□ 19.5
CDC40O60508 SEPT9-219ENST00000588575 559 ntTSL 418.82■□□□□ 0.61e-6■■■■□ 19.5
CDC40O60508 CHD4-205ENST00000536301 107 ntTSL 34.92□□□□□ -1.625e-6■■■■□ 19.5
CDC40O60508 ARAP1-210ENST00000465814 5612 ntTSL 214.92□□□□□ -0.021e-6■■■■□ 19.5
CDC40O60508 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.171e-6■■■■□ 19.5
CDC40O60508 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.311e-6■■■■□ 19.5
CDC40O60508 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.321e-6■■■■□ 19.5
CDC40O60508 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.381e-6■■■■□ 19.5
CDC40O60508 ARAP1-205ENST00000426523 4066 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.751e-6■■■■□ 19.5
CDC40O60508 ARAP1-207ENST00000429686 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.91e-6■■■■□ 19.5
CDC40O60508 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.871e-6■■■■□ 19.3
CDC40O60508 F7-205ENST00000479674 767 ntTSL 521.48■■□□□ 1.034e-7■■■■□ 19.3
CDC40O60508 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.231e-6■■■□□ 19.2
CDC40O60508 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.08□□□□□ -0.321e-6■■■□□ 19.2
CDC40O60508 SEPT9-201ENST00000329047 4453 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.541e-6■■■□□ 19.2
CDC40O60508 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.48■□□□□ 0.233e-6■■■□□ 19.2
CDC40O60508 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.76■□□□□ 0.113e-6■■■□□ 19.2
CDC40O60508 CMIP-211ENST00000621537 4000 ntTSL 5 BASIC10.73□□□□□ -0.693e-6■■■□□ 19.2
CDC40O60508 ARHGEF16-205ENST00000445297 836 ntTSL 321.07■□□□□ 0.962e-6■■■□□ 19.2
CDC40O60508 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.332e-6■■■□□ 19.2
CDC40O60508 CARD10-205ENST00000437756 2140 ntTSL 1 (best)16.85■□□□□ 0.292e-6■■■□□ 19.2
CDC40O60508 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.12e-6■■■□□ 19.2
CDC40O60508 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC12.65□□□□□ -0.382e-6■■■□□ 19.2
CDC40O60508 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.58□□□□□ -0.072e-8■■■□□ 19.2
Retrieved 100 of 5,364 protein–RNA pairs in 94.5 ms