Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
SSX4O60224 AC008813.1-201ENST00000536597 885 ntBASIC21.73■■□□□ 1.07
SSX4O60224 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SSX4O60224 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.73■■□□□ 1.07
SSX4O60224 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SSX4O60224 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SSX4O60224 AC135983.2-203ENST00000454486 1613 ntBASIC21.73■■□□□ 1.07
SSX4O60224 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SSX4O60224 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
SSX4O60224 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.72■■□□□ 1.07
SSX4O60224 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SSX4O60224 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SSX4O60224 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.72■■□□□ 1.07
SSX4O60224 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SSX4O60224 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SSX4O60224 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SSX4O60224 ERN1-208ENST00000606895 2068 ntBASIC21.71■■□□□ 1.07
SSX4O60224 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.71■■□□□ 1.07
SSX4O60224 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.71■■□□□ 1.07
SSX4O60224 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SSX4O60224 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
SSX4O60224 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.71■■□□□ 1.07
SSX4O60224 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
SSX4O60224 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
SSX4O60224 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SSX4O60224 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SSX4O60224 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SSX4O60224 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SSX4O60224 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SSX4O60224 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SSX4O60224 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
SSX4O60224 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
SSX4O60224 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
SSX4O60224 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SSX4O60224 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.68■■□□□ 1.06
SSX4O60224 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SSX4O60224 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.68■■□□□ 1.06
SSX4O60224 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SSX4O60224 AP004833.2-201ENST00000532228 1454 ntBASIC21.68■■□□□ 1.06
SSX4O60224 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SSX4O60224 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
SSX4O60224 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SSX4O60224 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SSX4O60224 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SSX4O60224 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SSX4O60224 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SSX4O60224 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SSX4O60224 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.66■■□□□ 1.06
SSX4O60224 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SSX4O60224 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SSX4O60224 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SSX4O60224 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SSX4O60224 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SSX4O60224 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.65■■□□□ 1.06
SSX4O60224 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SSX4O60224 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SSX4O60224 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
SSX4O60224 AC110285.7-201ENST00000624417 1536 ntBASIC21.65■■□□□ 1.06
SSX4O60224 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.64■■□□□ 1.06
SSX4O60224 AC092803.2-201ENST00000564287 1899 ntBASIC21.64■■□□□ 1.06
SSX4O60224 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SSX4O60224 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SSX4O60224 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SSX4O60224 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.64■■□□□ 1.05
SSX4O60224 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SSX4O60224 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
SSX4O60224 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.64■■□□□ 1.05
SSX4O60224 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.63■■□□□ 1.05
SSX4O60224 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SSX4O60224 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SSX4O60224 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SSX4O60224 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.63■■□□□ 1.05
SSX4O60224 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SSX4O60224 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.63■■□□□ 1.05
SSX4O60224 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
SSX4O60224 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
SSX4O60224 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SSX4O60224 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
SSX4O60224 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.62■■□□□ 1.05
SSX4O60224 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SSX4O60224 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SSX4O60224 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SSX4O60224 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SSX4O60224 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
SSX4O60224 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SSX4O60224 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.61■■□□□ 1.05
SSX4O60224 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SSX4O60224 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SSX4O60224 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.6■■□□□ 1.05
SSX4O60224 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SSX4O60224 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SSX4O60224 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SSX4O60224 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SSX4O60224 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SSX4O60224 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.6■■□□□ 1.05
SSX4O60224 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
SSX4O60224 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SSX4O60224 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.59■■□□□ 1.05
SSX4O60224 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SSX4O60224 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms