Protein–RNA interactions for Protein: A6H584

Col6a5, Collagen alpha-5(VI) chain, mousemouse

Predictions only

Length 2,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a5A6H584 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col6a5A6H584 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC17.21■□□□□ 0.35
Col6a5A6H584 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col6a5A6H584 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Col6a5A6H584 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col6a5A6H584 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC17.2■□□□□ 0.34
Col6a5A6H584 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col6a5A6H584 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col6a5A6H584 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col6a5A6H584 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col6a5A6H584 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col6a5A6H584 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col6a5A6H584 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col6a5A6H584 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Col6a5A6H584 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a5A6H584 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a5A6H584 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a5A6H584 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a5A6H584 Gm5874-201ENSMUST00000096101 508 ntBASIC17.17■□□□□ 0.34
Col6a5A6H584 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a5A6H584 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a5A6H584 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a5A6H584 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC17.17■□□□□ 0.34
Col6a5A6H584 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a5A6H584 Gm28731-201ENSMUST00000185564 1569 ntBASIC17.16■□□□□ 0.34
Col6a5A6H584 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC17.16■□□□□ 0.34
Col6a5A6H584 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
Col6a5A6H584 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a5A6H584 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a5A6H584 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a5A6H584 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a5A6H584 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a5A6H584 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC17.15■□□□□ 0.34
Col6a5A6H584 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a5A6H584 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a5A6H584 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a5A6H584 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a5A6H584 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a5A6H584 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a5A6H584 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a5A6H584 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Col6a5A6H584 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC17.15■□□□□ 0.34
Col6a5A6H584 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a5A6H584 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Col6a5A6H584 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC17.15■□□□□ 0.34
Col6a5A6H584 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a5A6H584 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a5A6H584 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Col6a5A6H584 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a5A6H584 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a5A6H584 Gm6139-201ENSMUST00000079261 882 ntBASIC17.14■□□□□ 0.33
Col6a5A6H584 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a5A6H584 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a5A6H584 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a5A6H584 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a5A6H584 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a5A6H584 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC17.13■□□□□ 0.33
Col6a5A6H584 Gm40881-201ENSMUST00000223397 166 ntBASIC17.13■□□□□ 0.33
Col6a5A6H584 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a5A6H584 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a5A6H584 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
Col6a5A6H584 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC17.12■□□□□ 0.33
Col6a5A6H584 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Col6a5A6H584 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a5A6H584 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a5A6H584 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a5A6H584 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a5A6H584 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a5A6H584 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.11■□□□□ 0.33
Col6a5A6H584 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC17.11■□□□□ 0.33
Col6a5A6H584 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC17.11■□□□□ 0.33
Col6a5A6H584 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC17.1■□□□□ 0.33
Col6a5A6H584 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a5A6H584 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC17.1■□□□□ 0.33
Col6a5A6H584 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC17.1■□□□□ 0.33
Col6a5A6H584 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Col6a5A6H584 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a5A6H584 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC17.1■□□□□ 0.33
Col6a5A6H584 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a5A6H584 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC17.09■□□□□ 0.33
Col6a5A6H584 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC17.09■□□□□ 0.33
Col6a5A6H584 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a5A6H584 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a5A6H584 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a5A6H584 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC17.08■□□□□ 0.33
Col6a5A6H584 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC17.08■□□□□ 0.32
Col6a5A6H584 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a5A6H584 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC17.07■□□□□ 0.32
Col6a5A6H584 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a5A6H584 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC17.07■□□□□ 0.32
Col6a5A6H584 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Col6a5A6H584 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Col6a5A6H584 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC17.07■□□□□ 0.32
Col6a5A6H584 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a5A6H584 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a5A6H584 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a5A6H584 Gm21168-201ENSMUST00000199646 1096 ntBASIC17.06■□□□□ 0.32
Col6a5A6H584 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a5A6H584 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a5A6H584 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms