Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SHISA3A0PJX4 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.15■□□□□ 0.98
SHISA3A0PJX4 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHISA3A0PJX4 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
SHISA3A0PJX4 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SHISA3A0PJX4 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.14■□□□□ 0.98
SHISA3A0PJX4 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SHISA3A0PJX4 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.14■□□□□ 0.98
SHISA3A0PJX4 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SHISA3A0PJX4 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SHISA3A0PJX4 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHISA3A0PJX4 SUZ12P1-203ENST00000578195 985 ntBASIC21.14■□□□□ 0.97
SHISA3A0PJX4 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.14■□□□□ 0.97
SHISA3A0PJX4 LINC01124-201ENST00000409786 2117 ntBASIC21.14■□□□□ 0.97
SHISA3A0PJX4 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHISA3A0PJX4 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHISA3A0PJX4 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
SHISA3A0PJX4 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
SHISA3A0PJX4 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHISA3A0PJX4 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHISA3A0PJX4 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHISA3A0PJX4 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SHISA3A0PJX4 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHISA3A0PJX4 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHISA3A0PJX4 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHISA3A0PJX4 DUX4L28-201ENST00000623687 678 ntBASIC21.12■□□□□ 0.97
SHISA3A0PJX4 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHISA3A0PJX4 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHISA3A0PJX4 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
SHISA3A0PJX4 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHISA3A0PJX4 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHISA3A0PJX4 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHISA3A0PJX4 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHISA3A0PJX4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHISA3A0PJX4 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHISA3A0PJX4 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHISA3A0PJX4 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHISA3A0PJX4 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.11■□□□□ 0.97
SHISA3A0PJX4 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.11■□□□□ 0.97
SHISA3A0PJX4 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.11■□□□□ 0.97
SHISA3A0PJX4 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHISA3A0PJX4 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHISA3A0PJX4 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHISA3A0PJX4 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHISA3A0PJX4 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHISA3A0PJX4 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SHISA3A0PJX4 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.11■□□□□ 0.97
SHISA3A0PJX4 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.1■□□□□ 0.97
SHISA3A0PJX4 AC012676.1-201ENST00000574705 1949 ntBASIC21.1■□□□□ 0.97
SHISA3A0PJX4 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHISA3A0PJX4 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHISA3A0PJX4 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SHISA3A0PJX4 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHISA3A0PJX4 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHISA3A0PJX4 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SHISA3A0PJX4 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC21.09■□□□□ 0.97
SHISA3A0PJX4 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHISA3A0PJX4 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.09■□□□□ 0.97
SHISA3A0PJX4 AC068473.5-201ENST00000616428 2072 ntBASIC21.09■□□□□ 0.97
SHISA3A0PJX4 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHISA3A0PJX4 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHISA3A0PJX4 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SHISA3A0PJX4 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
SHISA3A0PJX4 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHISA3A0PJX4 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
SHISA3A0PJX4 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHISA3A0PJX4 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SHISA3A0PJX4 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHISA3A0PJX4 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHISA3A0PJX4 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHISA3A0PJX4 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.06■□□□□ 0.96
SHISA3A0PJX4 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.06■□□□□ 0.96
SHISA3A0PJX4 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHISA3A0PJX4 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHISA3A0PJX4 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.06■□□□□ 0.96
SHISA3A0PJX4 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHISA3A0PJX4 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHISA3A0PJX4 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.06■□□□□ 0.96
SHISA3A0PJX4 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SHISA3A0PJX4 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.06■□□□□ 0.96
SHISA3A0PJX4 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHISA3A0PJX4 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHISA3A0PJX4 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.05■□□□□ 0.96
SHISA3A0PJX4 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.05■□□□□ 0.96
SHISA3A0PJX4 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
SHISA3A0PJX4 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.05■□□□□ 0.96
SHISA3A0PJX4 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SHISA3A0PJX4 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHISA3A0PJX4 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SHISA3A0PJX4 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHISA3A0PJX4 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SHISA3A0PJX4 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
SHISA3A0PJX4 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHISA3A0PJX4 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHISA3A0PJX4 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHISA3A0PJX4 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.03■□□□□ 0.96
SHISA3A0PJX4 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHISA3A0PJX4 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHISA3A0PJX4 AC097639.1-201ENST00000565519 1891 ntBASIC21.03■□□□□ 0.96
SHISA3A0PJX4 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms