Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
TCRBV3S1A0A5B6 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
TCRBV3S1A0A5B6 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
TCRBV3S1A0A5B6 CASK-201ENST00000378154 2494 ntTSL 5 BASIC22.73■■□□□ 1.23
TCRBV3S1A0A5B6 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC22.73■■□□□ 1.23
TCRBV3S1A0A5B6 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC22.73■■□□□ 1.23
TCRBV3S1A0A5B6 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
TCRBV3S1A0A5B6 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
TCRBV3S1A0A5B6 LINC01124-201ENST00000409786 2117 ntBASIC22.72■■□□□ 1.23
TCRBV3S1A0A5B6 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC22.72■■□□□ 1.23
TCRBV3S1A0A5B6 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC22.71■■□□□ 1.23
TCRBV3S1A0A5B6 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
TCRBV3S1A0A5B6 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC22.71■■□□□ 1.23
TCRBV3S1A0A5B6 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
TCRBV3S1A0A5B6 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
TCRBV3S1A0A5B6 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
TCRBV3S1A0A5B6 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
TCRBV3S1A0A5B6 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
TCRBV3S1A0A5B6 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
TCRBV3S1A0A5B6 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
TCRBV3S1A0A5B6 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC22.7■■□□□ 1.23
TCRBV3S1A0A5B6 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.23
TCRBV3S1A0A5B6 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.23
TCRBV3S1A0A5B6 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC22.7■■□□□ 1.23
TCRBV3S1A0A5B6 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
TCRBV3S1A0A5B6 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC22.7■■□□□ 1.22
TCRBV3S1A0A5B6 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
TCRBV3S1A0A5B6 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
TCRBV3S1A0A5B6 AC068473.5-201ENST00000616428 2072 ntBASIC22.7■■□□□ 1.22
TCRBV3S1A0A5B6 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
TCRBV3S1A0A5B6 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TCRBV3S1A0A5B6 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
TCRBV3S1A0A5B6 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
TCRBV3S1A0A5B6 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
TCRBV3S1A0A5B6 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC22.69■■□□□ 1.22
TCRBV3S1A0A5B6 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TCRBV3S1A0A5B6 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
TCRBV3S1A0A5B6 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TCRBV3S1A0A5B6 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC22.69■■□□□ 1.22
TCRBV3S1A0A5B6 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC22.69■■□□□ 1.22
TCRBV3S1A0A5B6 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
TCRBV3S1A0A5B6 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TCRBV3S1A0A5B6 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.68■■□□□ 1.22
TCRBV3S1A0A5B6 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TCRBV3S1A0A5B6 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TCRBV3S1A0A5B6 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
TCRBV3S1A0A5B6 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC22.67■■□□□ 1.22
TCRBV3S1A0A5B6 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
TCRBV3S1A0A5B6 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TCRBV3S1A0A5B6 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
TCRBV3S1A0A5B6 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC22.66■■□□□ 1.22
TCRBV3S1A0A5B6 AP003733.4-201ENST00000623785 1697 ntBASIC22.66■■□□□ 1.22
TCRBV3S1A0A5B6 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
TCRBV3S1A0A5B6 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
TCRBV3S1A0A5B6 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
TCRBV3S1A0A5B6 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TCRBV3S1A0A5B6 AC097639.1-201ENST00000565519 1891 ntBASIC22.66■■□□□ 1.22
TCRBV3S1A0A5B6 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TCRBV3S1A0A5B6 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC22.66■■□□□ 1.22
TCRBV3S1A0A5B6 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
TCRBV3S1A0A5B6 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC22.66■■□□□ 1.22
TCRBV3S1A0A5B6 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TCRBV3S1A0A5B6 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TCRBV3S1A0A5B6 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
TCRBV3S1A0A5B6 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TCRBV3S1A0A5B6 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC22.64■■□□□ 1.22
TCRBV3S1A0A5B6 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
TCRBV3S1A0A5B6 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC22.64■■□□□ 1.21
TCRBV3S1A0A5B6 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TCRBV3S1A0A5B6 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TCRBV3S1A0A5B6 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC22.63■■□□□ 1.21
TCRBV3S1A0A5B6 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
TCRBV3S1A0A5B6 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
TCRBV3S1A0A5B6 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TCRBV3S1A0A5B6 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TCRBV3S1A0A5B6 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
TCRBV3S1A0A5B6 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC22.62■■□□□ 1.21
TCRBV3S1A0A5B6 HNRNPLP2-201ENST00000568980 1570 ntBASIC22.62■■□□□ 1.21
TCRBV3S1A0A5B6 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC22.62■■□□□ 1.21
TCRBV3S1A0A5B6 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
TCRBV3S1A0A5B6 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TCRBV3S1A0A5B6 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
TCRBV3S1A0A5B6 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TCRBV3S1A0A5B6 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC22.6■■□□□ 1.21
TCRBV3S1A0A5B6 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TCRBV3S1A0A5B6 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
TCRBV3S1A0A5B6 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TCRBV3S1A0A5B6 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC22.6■■□□□ 1.21
TCRBV3S1A0A5B6 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TCRBV3S1A0A5B6 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC22.6■■□□□ 1.21
TCRBV3S1A0A5B6 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC22.6■■□□□ 1.21
TCRBV3S1A0A5B6 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
TCRBV3S1A0A5B6 LINC00543-201ENST00000567234 1845 ntBASIC22.59■■□□□ 1.21
TCRBV3S1A0A5B6 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
TCRBV3S1A0A5B6 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
TCRBV3S1A0A5B6 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TCRBV3S1A0A5B6 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TCRBV3S1A0A5B6 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.59■■□□□ 1.21
TCRBV3S1A0A5B6 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC22.59■■□□□ 1.21
TCRBV3S1A0A5B6 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC22.59■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms