Protein–RNA interactions for Protein: A0A0A6YWQ1

Trbv23, T cell receptor beta, variable V23 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv23A0A0A6YWQ1 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trbv23A0A0A6YWQ1 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Trbv23A0A0A6YWQ1 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Trbv23A0A0A6YWQ1 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trbv23A0A0A6YWQ1 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
Trbv23A0A0A6YWQ1 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
Trbv23A0A0A6YWQ1 Hsf1-207ENSMUST00000228371 2102 ntBASIC18.76■□□□□ 0.59
Trbv23A0A0A6YWQ1 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC18.76■□□□□ 0.59
Trbv23A0A0A6YWQ1 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Trbv23A0A0A6YWQ1 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv23A0A0A6YWQ1 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trbv23A0A0A6YWQ1 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Trbv23A0A0A6YWQ1 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trbv23A0A0A6YWQ1 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC18.75■□□□□ 0.59
Trbv23A0A0A6YWQ1 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC18.75■□□□□ 0.59
Trbv23A0A0A6YWQ1 Gm7432-201ENSMUST00000210343 879 ntBASIC18.75■□□□□ 0.59
Trbv23A0A0A6YWQ1 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trbv23A0A0A6YWQ1 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv23A0A0A6YWQ1 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv23A0A0A6YWQ1 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv23A0A0A6YWQ1 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv23A0A0A6YWQ1 AC131739.1-201ENSMUST00000221692 1245 ntBASIC18.74■□□□□ 0.59
Trbv23A0A0A6YWQ1 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Trbv23A0A0A6YWQ1 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv23A0A0A6YWQ1 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Trbv23A0A0A6YWQ1 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv23A0A0A6YWQ1 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv23A0A0A6YWQ1 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC18.73■□□□□ 0.59
Trbv23A0A0A6YWQ1 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv23A0A0A6YWQ1 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv23A0A0A6YWQ1 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv23A0A0A6YWQ1 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv23A0A0A6YWQ1 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Trbv23A0A0A6YWQ1 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Trbv23A0A0A6YWQ1 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trbv23A0A0A6YWQ1 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Trbv23A0A0A6YWQ1 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.58
Trbv23A0A0A6YWQ1 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv23A0A0A6YWQ1 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv23A0A0A6YWQ1 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv23A0A0A6YWQ1 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv23A0A0A6YWQ1 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC18.7■□□□□ 0.58
Trbv23A0A0A6YWQ1 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv23A0A0A6YWQ1 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Trbv23A0A0A6YWQ1 AC153524.1-201ENSMUST00000220436 1935 ntBASIC18.7■□□□□ 0.58
Trbv23A0A0A6YWQ1 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv23A0A0A6YWQ1 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv23A0A0A6YWQ1 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv23A0A0A6YWQ1 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv23A0A0A6YWQ1 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv23A0A0A6YWQ1 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv23A0A0A6YWQ1 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv23A0A0A6YWQ1 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv23A0A0A6YWQ1 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv23A0A0A6YWQ1 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv23A0A0A6YWQ1 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv23A0A0A6YWQ1 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv23A0A0A6YWQ1 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv23A0A0A6YWQ1 Gm37136-201ENSMUST00000194368 194 ntBASIC18.68■□□□□ 0.58
Trbv23A0A0A6YWQ1 Gm37415-201ENSMUST00000192265 2054 ntBASIC18.68■□□□□ 0.58
Trbv23A0A0A6YWQ1 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Trbv23A0A0A6YWQ1 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv23A0A0A6YWQ1 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv23A0A0A6YWQ1 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trbv23A0A0A6YWQ1 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv23A0A0A6YWQ1 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv23A0A0A6YWQ1 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv23A0A0A6YWQ1 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv23A0A0A6YWQ1 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv23A0A0A6YWQ1 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv23A0A0A6YWQ1 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 AC124392.1-201ENSMUST00000225172 5324 ntBASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 Gm11599-201ENSMUST00000118720 878 ntBASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC18.65■□□□□ 0.58
Trbv23A0A0A6YWQ1 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trbv23A0A0A6YWQ1 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Trbv23A0A0A6YWQ1 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC18.64■□□□□ 0.57
Trbv23A0A0A6YWQ1 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trbv23A0A0A6YWQ1 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv23A0A0A6YWQ1 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv23A0A0A6YWQ1 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv23A0A0A6YWQ1 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv23A0A0A6YWQ1 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv23A0A0A6YWQ1 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv23A0A0A6YWQ1 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trbv23A0A0A6YWQ1 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv23A0A0A6YWQ1 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv23A0A0A6YWQ1 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Trbv23A0A0A6YWQ1 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms