Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NUCKS1Q9H1E3 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NUCKS1Q9H1E3 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NUCKS1Q9H1E3 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
NUCKS1Q9H1E3 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC26.36■■□□□ 1.81
NUCKS1Q9H1E3 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.36■■□□□ 1.81
NUCKS1Q9H1E3 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC26.35■■□□□ 1.81
NUCKS1Q9H1E3 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC26.35■■□□□ 1.81
NUCKS1Q9H1E3 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC26.35■■□□□ 1.81
NUCKS1Q9H1E3 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NUCKS1Q9H1E3 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC26.34■■□□□ 1.81
NUCKS1Q9H1E3 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
NUCKS1Q9H1E3 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NUCKS1Q9H1E3 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
NUCKS1Q9H1E3 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
NUCKS1Q9H1E3 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NUCKS1Q9H1E3 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NUCKS1Q9H1E3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NUCKS1Q9H1E3 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
NUCKS1Q9H1E3 MIR219A2-201ENST00000608502 1504 ntBASIC26.32■■□□□ 1.8
NUCKS1Q9H1E3 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NUCKS1Q9H1E3 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NUCKS1Q9H1E3 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NUCKS1Q9H1E3 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NUCKS1Q9H1E3 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
NUCKS1Q9H1E3 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NUCKS1Q9H1E3 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NUCKS1Q9H1E3 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NUCKS1Q9H1E3 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NUCKS1Q9H1E3 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NUCKS1Q9H1E3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
NUCKS1Q9H1E3 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
NUCKS1Q9H1E3 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
NUCKS1Q9H1E3 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NUCKS1Q9H1E3 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
NUCKS1Q9H1E3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NUCKS1Q9H1E3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
NUCKS1Q9H1E3 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NUCKS1Q9H1E3 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NUCKS1Q9H1E3 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NUCKS1Q9H1E3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NUCKS1Q9H1E3 ERN1-208ENST00000606895 2068 ntBASIC26.27■■□□□ 1.8
NUCKS1Q9H1E3 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
NUCKS1Q9H1E3 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC26.27■■□□□ 1.8
NUCKS1Q9H1E3 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC26.27■■□□□ 1.8
NUCKS1Q9H1E3 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC26.27■■□□□ 1.8
NUCKS1Q9H1E3 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC26.27■■□□□ 1.8
NUCKS1Q9H1E3 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.27■■□□□ 1.8
NUCKS1Q9H1E3 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
NUCKS1Q9H1E3 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
NUCKS1Q9H1E3 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
NUCKS1Q9H1E3 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC26.26■■□□□ 1.79
NUCKS1Q9H1E3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC26.26■■□□□ 1.79
NUCKS1Q9H1E3 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NUCKS1Q9H1E3 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.26■■□□□ 1.79
NUCKS1Q9H1E3 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC26.25■■□□□ 1.79
NUCKS1Q9H1E3 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
NUCKS1Q9H1E3 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC26.25■■□□□ 1.79
NUCKS1Q9H1E3 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC26.25■■□□□ 1.79
NUCKS1Q9H1E3 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC26.25■■□□□ 1.79
NUCKS1Q9H1E3 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NUCKS1Q9H1E3 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NUCKS1Q9H1E3 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
NUCKS1Q9H1E3 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
NUCKS1Q9H1E3 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.24■■□□□ 1.79
NUCKS1Q9H1E3 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
NUCKS1Q9H1E3 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NUCKS1Q9H1E3 CHST11-203ENST00000547956 936 ntTSL 2 BASIC26.24■■□□□ 1.79
NUCKS1Q9H1E3 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
NUCKS1Q9H1E3 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
NUCKS1Q9H1E3 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
NUCKS1Q9H1E3 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
NUCKS1Q9H1E3 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
NUCKS1Q9H1E3 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
NUCKS1Q9H1E3 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
NUCKS1Q9H1E3 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
NUCKS1Q9H1E3 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
NUCKS1Q9H1E3 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC26.21■■□□□ 1.79
NUCKS1Q9H1E3 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
NUCKS1Q9H1E3 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
NUCKS1Q9H1E3 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC26.21■■□□□ 1.79
NUCKS1Q9H1E3 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC26.21■■□□□ 1.79
NUCKS1Q9H1E3 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
NUCKS1Q9H1E3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
NUCKS1Q9H1E3 CEBPA-AS1-201ENST00000592982 2198 ntBASIC26.21■■□□□ 1.79
NUCKS1Q9H1E3 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NUCKS1Q9H1E3 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
NUCKS1Q9H1E3 AL359258.2-201ENST00000564063 1566 ntBASIC26.19■■□□□ 1.78
NUCKS1Q9H1E3 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
NUCKS1Q9H1E3 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
NUCKS1Q9H1E3 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
NUCKS1Q9H1E3 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
NUCKS1Q9H1E3 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
NUCKS1Q9H1E3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
NUCKS1Q9H1E3 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC26.17■■□□□ 1.78
NUCKS1Q9H1E3 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
NUCKS1Q9H1E3 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC26.16■■□□□ 1.78
NUCKS1Q9H1E3 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
NUCKS1Q9H1E3 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
NUCKS1Q9H1E3 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms