Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
RTF1Q92541 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
RTF1Q92541 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC32.02■■■□□ 2.72
RTF1Q92541 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
RTF1Q92541 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC32.02■■■□□ 2.72
RTF1Q92541 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
RTF1Q92541 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC32.02■■■□□ 2.72
RTF1Q92541 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
RTF1Q92541 AC018755.3-202ENST00000596210 929 ntBASIC32.01■■■□□ 2.71
RTF1Q92541 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
RTF1Q92541 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC32■■■□□ 2.71
RTF1Q92541 MIR6765-201ENST00000614092 87 ntBASIC32■■■□□ 2.71
RTF1Q92541 SHF-208ENST00000560734 1731 ntTSL 3 BASIC32■■■□□ 2.71
RTF1Q92541 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC31.99■■■□□ 2.71
RTF1Q92541 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
RTF1Q92541 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
RTF1Q92541 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC31.99■■■□□ 2.71
RTF1Q92541 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC31.99■■■□□ 2.71
RTF1Q92541 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC31.99■■■□□ 2.71
RTF1Q92541 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
RTF1Q92541 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
RTF1Q92541 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC31.97■■■□□ 2.71
RTF1Q92541 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
RTF1Q92541 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
RTF1Q92541 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC31.96■■■□□ 2.71
RTF1Q92541 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
RTF1Q92541 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC31.96■■■□□ 2.71
RTF1Q92541 AC142472.1-201ENST00000612013 1741 ntBASIC31.96■■■□□ 2.71
RTF1Q92541 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
RTF1Q92541 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
RTF1Q92541 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC31.96■■■□□ 2.71
RTF1Q92541 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC31.96■■■□□ 2.71
RTF1Q92541 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC31.96■■■□□ 2.71
RTF1Q92541 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC31.96■■■□□ 2.71
RTF1Q92541 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC31.95■■■□□ 2.71
RTF1Q92541 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
RTF1Q92541 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
RTF1Q92541 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC31.95■■■□□ 2.7
RTF1Q92541 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC31.95■■■□□ 2.7
RTF1Q92541 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC31.94■■■□□ 2.7
RTF1Q92541 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC31.94■■■□□ 2.7
RTF1Q92541 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC31.94■■■□□ 2.7
RTF1Q92541 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
RTF1Q92541 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
RTF1Q92541 BHLHE23-202ENST00000612929 1109 ntBASIC31.93■■■□□ 2.7
RTF1Q92541 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC31.93■■■□□ 2.7
RTF1Q92541 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
RTF1Q92541 AP004609.3-201ENST00000610705 1884 ntBASIC31.93■■■□□ 2.7
RTF1Q92541 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC31.92■■■□□ 2.7
RTF1Q92541 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
RTF1Q92541 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC31.91■■■□□ 2.7
RTF1Q92541 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
RTF1Q92541 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
RTF1Q92541 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC31.9■■■□□ 2.7
RTF1Q92541 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC31.9■■■□□ 2.7
RTF1Q92541 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
RTF1Q92541 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC31.89■■■□□ 2.7
RTF1Q92541 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC31.89■■■□□ 2.7
RTF1Q92541 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC31.89■■■□□ 2.69
RTF1Q92541 AC139795.1-202ENST00000500444 432 ntBASIC31.88■■■□□ 2.69
RTF1Q92541 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC31.88■■■□□ 2.69
RTF1Q92541 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC31.88■■■□□ 2.69
RTF1Q92541 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC31.88■■■□□ 2.69
RTF1Q92541 HYI-210ENST00000486909 905 ntTSL 5 BASIC31.87■■■□□ 2.69
RTF1Q92541 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
RTF1Q92541 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
RTF1Q92541 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
RTF1Q92541 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
RTF1Q92541 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
RTF1Q92541 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
RTF1Q92541 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
RTF1Q92541 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
RTF1Q92541 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
RTF1Q92541 IDNK-203ENST00000405990 629 ntTSL 2 BASIC31.85■■■□□ 2.69
RTF1Q92541 RARRES2P1-201ENST00000474487 481 ntBASIC31.85■■■□□ 2.69
RTF1Q92541 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
RTF1Q92541 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC31.84■■■□□ 2.69
RTF1Q92541 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
RTF1Q92541 AC074183.2-201ENST00000623112 922 ntBASIC31.84■■■□□ 2.69
RTF1Q92541 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
RTF1Q92541 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC31.83■■■□□ 2.69
RTF1Q92541 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
RTF1Q92541 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.69
RTF1Q92541 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC31.82■■■□□ 2.69
RTF1Q92541 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
RTF1Q92541 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC31.82■■■□□ 2.68
RTF1Q92541 AC010980.1-201ENST00000587192 1142 ntBASIC31.82■■■□□ 2.68
RTF1Q92541 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC31.8■■■□□ 2.68
RTF1Q92541 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
RTF1Q92541 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
RTF1Q92541 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
RTF1Q92541 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC31.79■■■□□ 2.68
RTF1Q92541 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC31.79■■■□□ 2.68
RTF1Q92541 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC31.78■■■□□ 2.68
RTF1Q92541 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
RTF1Q92541 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
RTF1Q92541 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
RTF1Q92541 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
RTF1Q92541 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
RTF1Q92541 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC31.77■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms