Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 RNF126P1-201ENST00000567452 1320 ntBASIC23.94■■□□□ 1.42
VRK3Q8IV63 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.94■■□□□ 1.42
VRK3Q8IV63 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.94■■□□□ 1.42
VRK3Q8IV63 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.94■■□□□ 1.42
VRK3Q8IV63 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC23.94■■□□□ 1.42
VRK3Q8IV63 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
VRK3Q8IV63 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.93■■□□□ 1.42
VRK3Q8IV63 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
VRK3Q8IV63 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
VRK3Q8IV63 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC23.93■■□□□ 1.42
VRK3Q8IV63 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VRK3Q8IV63 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.92■■□□□ 1.42
VRK3Q8IV63 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VRK3Q8IV63 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VRK3Q8IV63 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VRK3Q8IV63 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
VRK3Q8IV63 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.91■■□□□ 1.42
VRK3Q8IV63 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.91■■□□□ 1.42
VRK3Q8IV63 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VRK3Q8IV63 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC23.9■■□□□ 1.42
VRK3Q8IV63 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
VRK3Q8IV63 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VRK3Q8IV63 PFN2-211ENST00000489155 636 ntTSL 4 BASIC23.9■■□□□ 1.42
VRK3Q8IV63 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VRK3Q8IV63 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VRK3Q8IV63 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VRK3Q8IV63 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
VRK3Q8IV63 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
VRK3Q8IV63 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
VRK3Q8IV63 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.89■■□□□ 1.41
VRK3Q8IV63 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.89■■□□□ 1.41
VRK3Q8IV63 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
VRK3Q8IV63 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.88■■□□□ 1.41
VRK3Q8IV63 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
VRK3Q8IV63 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.87■■□□□ 1.41
VRK3Q8IV63 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
VRK3Q8IV63 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
VRK3Q8IV63 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
VRK3Q8IV63 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
VRK3Q8IV63 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
VRK3Q8IV63 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
VRK3Q8IV63 AC091060.1-201ENST00000623524 1766 ntBASIC23.86■■□□□ 1.41
VRK3Q8IV63 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
VRK3Q8IV63 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
VRK3Q8IV63 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VRK3Q8IV63 RARRES2P2-201ENST00000394842 485 ntBASIC23.86■■□□□ 1.41
VRK3Q8IV63 AC007029.1-201ENST00000604183 313 ntBASIC23.86■■□□□ 1.41
VRK3Q8IV63 BRD4-212ENST00000630599 726 ntTSL 2 BASIC23.86■■□□□ 1.41
VRK3Q8IV63 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VRK3Q8IV63 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
VRK3Q8IV63 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
VRK3Q8IV63 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
VRK3Q8IV63 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC23.85■■□□□ 1.41
VRK3Q8IV63 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC23.85■■□□□ 1.41
VRK3Q8IV63 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
VRK3Q8IV63 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
VRK3Q8IV63 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.84■■□□□ 1.41
VRK3Q8IV63 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
VRK3Q8IV63 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.84■■□□□ 1.41
VRK3Q8IV63 MIR3960-201ENST00000583311 91 ntBASIC23.84■■□□□ 1.41
VRK3Q8IV63 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
VRK3Q8IV63 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.83■■□□□ 1.41
VRK3Q8IV63 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VRK3Q8IV63 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VRK3Q8IV63 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
VRK3Q8IV63 AC092803.2-201ENST00000564287 1899 ntBASIC23.83■■□□□ 1.4
VRK3Q8IV63 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
VRK3Q8IV63 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
VRK3Q8IV63 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
VRK3Q8IV63 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
VRK3Q8IV63 RP9P-202ENST00000450133 1212 ntBASIC23.82■■□□□ 1.4
VRK3Q8IV63 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC23.82■■□□□ 1.4
VRK3Q8IV63 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.81■■□□□ 1.4
VRK3Q8IV63 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.81■■□□□ 1.4
VRK3Q8IV63 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
VRK3Q8IV63 AC093536.1-201ENST00000569153 554 ntBASIC23.81■■□□□ 1.4
VRK3Q8IV63 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.81■■□□□ 1.4
VRK3Q8IV63 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
VRK3Q8IV63 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.81■■□□□ 1.4
VRK3Q8IV63 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
VRK3Q8IV63 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
VRK3Q8IV63 ERN1-208ENST00000606895 2068 ntBASIC23.8■■□□□ 1.4
VRK3Q8IV63 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.8■■□□□ 1.4
VRK3Q8IV63 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VRK3Q8IV63 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.79■■□□□ 1.4
VRK3Q8IV63 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.78■■□□□ 1.4
VRK3Q8IV63 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.78■■□□□ 1.4
VRK3Q8IV63 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.77■■□□□ 1.4
VRK3Q8IV63 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VRK3Q8IV63 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VRK3Q8IV63 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
VRK3Q8IV63 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
VRK3Q8IV63 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VRK3Q8IV63 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
VRK3Q8IV63 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
VRK3Q8IV63 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
VRK3Q8IV63 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC23.76■■□□□ 1.39
VRK3Q8IV63 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VRK3Q8IV63 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
VRK3Q8IV63 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms