Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 AL162393.1-201ENST00000437852 946 ntBASIC23.18■■□□□ 1.3
RETREG3Q86VR2 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RETREG3Q86VR2 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RETREG3Q86VR2 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.17■■□□□ 1.3
RETREG3Q86VR2 AC096887.2-201ENST00000623443 1957 ntBASIC23.16■■□□□ 1.3
RETREG3Q86VR2 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RETREG3Q86VR2 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.16■■□□□ 1.3
RETREG3Q86VR2 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RETREG3Q86VR2 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RETREG3Q86VR2 AL139125.2-201ENST00000623134 1869 ntBASIC23.15■■□□□ 1.3
RETREG3Q86VR2 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RETREG3Q86VR2 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.15■■□□□ 1.3
RETREG3Q86VR2 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
RETREG3Q86VR2 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
RETREG3Q86VR2 AC044849.2-201ENST00000606596 710 ntBASIC23.15■■□□□ 1.3
RETREG3Q86VR2 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
RETREG3Q86VR2 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RETREG3Q86VR2 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
RETREG3Q86VR2 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
RETREG3Q86VR2 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.15■■□□□ 1.3
RETREG3Q86VR2 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
RETREG3Q86VR2 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RETREG3Q86VR2 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC23.14■■□□□ 1.29
RETREG3Q86VR2 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC23.14■■□□□ 1.29
RETREG3Q86VR2 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RETREG3Q86VR2 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23.14■■□□□ 1.29
RETREG3Q86VR2 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC23.14■■□□□ 1.29
RETREG3Q86VR2 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
RETREG3Q86VR2 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
RETREG3Q86VR2 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RETREG3Q86VR2 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.13■■□□□ 1.29
RETREG3Q86VR2 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
RETREG3Q86VR2 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
RETREG3Q86VR2 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.13■■□□□ 1.29
RETREG3Q86VR2 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RETREG3Q86VR2 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RETREG3Q86VR2 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
RETREG3Q86VR2 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RETREG3Q86VR2 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RETREG3Q86VR2 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RETREG3Q86VR2 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.12■■□□□ 1.29
RETREG3Q86VR2 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
RETREG3Q86VR2 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RETREG3Q86VR2 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RETREG3Q86VR2 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
RETREG3Q86VR2 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC23.1■■□□□ 1.29
RETREG3Q86VR2 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RETREG3Q86VR2 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.1■■□□□ 1.29
RETREG3Q86VR2 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
RETREG3Q86VR2 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RETREG3Q86VR2 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RETREG3Q86VR2 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.09■■□□□ 1.29
RETREG3Q86VR2 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RETREG3Q86VR2 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.09■■□□□ 1.29
RETREG3Q86VR2 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.09■■□□□ 1.29
RETREG3Q86VR2 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RETREG3Q86VR2 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.08■■□□□ 1.29
RETREG3Q86VR2 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.08■■□□□ 1.29
RETREG3Q86VR2 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RETREG3Q86VR2 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
RETREG3Q86VR2 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.08■■□□□ 1.28
RETREG3Q86VR2 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RETREG3Q86VR2 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RETREG3Q86VR2 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.06■■□□□ 1.28
RETREG3Q86VR2 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.06■■□□□ 1.28
RETREG3Q86VR2 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RETREG3Q86VR2 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
RETREG3Q86VR2 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RETREG3Q86VR2 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.06■■□□□ 1.28
RETREG3Q86VR2 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
RETREG3Q86VR2 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
RETREG3Q86VR2 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RETREG3Q86VR2 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RETREG3Q86VR2 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
RETREG3Q86VR2 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RETREG3Q86VR2 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
RETREG3Q86VR2 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC23.05■■□□□ 1.28
RETREG3Q86VR2 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
RETREG3Q86VR2 DUX4L29-201ENST00000425409 679 ntBASIC23.05■■□□□ 1.28
RETREG3Q86VR2 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.05■■□□□ 1.28
RETREG3Q86VR2 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RETREG3Q86VR2 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
RETREG3Q86VR2 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.05■■□□□ 1.28
RETREG3Q86VR2 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RETREG3Q86VR2 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.04■■□□□ 1.28
RETREG3Q86VR2 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RETREG3Q86VR2 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.04■■□□□ 1.28
RETREG3Q86VR2 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RETREG3Q86VR2 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.04■■□□□ 1.28
RETREG3Q86VR2 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RETREG3Q86VR2 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RETREG3Q86VR2 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.03■■□□□ 1.28
RETREG3Q86VR2 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RETREG3Q86VR2 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RETREG3Q86VR2 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.03■■□□□ 1.28
RETREG3Q86VR2 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms