Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col7a1Q63870 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col7a1Q63870 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col7a1Q63870 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col7a1Q63870 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col7a1Q63870 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC19.24■□□□□ 0.67
Col7a1Q63870 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col7a1Q63870 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC19.24■□□□□ 0.67
Col7a1Q63870 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col7a1Q63870 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.23■□□□□ 0.67
Col7a1Q63870 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Col7a1Q63870 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col7a1Q63870 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col7a1Q63870 Gm43445-201ENSMUST00000198564 2091 ntBASIC19.23■□□□□ 0.67
Col7a1Q63870 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC19.22■□□□□ 0.67
Col7a1Q63870 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col7a1Q63870 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC19.22■□□□□ 0.67
Col7a1Q63870 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
Col7a1Q63870 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC19.21■□□□□ 0.67
Col7a1Q63870 Gm27011-201ENSMUST00000182352 972 ntBASIC19.21■□□□□ 0.67
Col7a1Q63870 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col7a1Q63870 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.21■□□□□ 0.67
Col7a1Q63870 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col7a1Q63870 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col7a1Q63870 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col7a1Q63870 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col7a1Q63870 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col7a1Q63870 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col7a1Q63870 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC19.21■□□□□ 0.67
Col7a1Q63870 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC19.2■□□□□ 0.66
Col7a1Q63870 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC19.2■□□□□ 0.66
Col7a1Q63870 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col7a1Q63870 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col7a1Q63870 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
Col7a1Q63870 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col7a1Q63870 AC117769.4-201ENSMUST00000225679 685 ntBASIC19.18■□□□□ 0.66
Col7a1Q63870 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col7a1Q63870 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col7a1Q63870 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col7a1Q63870 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col7a1Q63870 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.17■□□□□ 0.66
Col7a1Q63870 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.17■□□□□ 0.66
Col7a1Q63870 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col7a1Q63870 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col7a1Q63870 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
Col7a1Q63870 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC19.16■□□□□ 0.66
Col7a1Q63870 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Col7a1Q63870 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col7a1Q63870 AC112142.1-201ENSMUST00000228796 918 ntBASIC19.16■□□□□ 0.66
Col7a1Q63870 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Col7a1Q63870 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC19.16■□□□□ 0.66
Col7a1Q63870 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col7a1Q63870 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
Col7a1Q63870 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col7a1Q63870 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col7a1Q63870 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col7a1Q63870 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
Col7a1Q63870 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col7a1Q63870 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col7a1Q63870 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col7a1Q63870 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col7a1Q63870 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col7a1Q63870 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC19.14■□□□□ 0.65
Col7a1Q63870 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col7a1Q63870 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col7a1Q63870 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
Col7a1Q63870 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col7a1Q63870 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.13■□□□□ 0.65
Col7a1Q63870 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC19.13■□□□□ 0.65
Col7a1Q63870 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Col7a1Q63870 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col7a1Q63870 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC19.12■□□□□ 0.65
Col7a1Q63870 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col7a1Q63870 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col7a1Q63870 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col7a1Q63870 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col7a1Q63870 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC19.11■□□□□ 0.65
Col7a1Q63870 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col7a1Q63870 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.11■□□□□ 0.65
Col7a1Q63870 Gm40881-201ENSMUST00000223397 166 ntBASIC19.11■□□□□ 0.65
Col7a1Q63870 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col7a1Q63870 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col7a1Q63870 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Col7a1Q63870 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Col7a1Q63870 Gm2011-201ENSMUST00000203124 1263 ntBASIC19.1■□□□□ 0.65
Col7a1Q63870 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col7a1Q63870 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col7a1Q63870 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC19.08■□□□□ 0.65
Col7a1Q63870 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC19.08■□□□□ 0.65
Col7a1Q63870 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col7a1Q63870 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col7a1Q63870 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Col7a1Q63870 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col7a1Q63870 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC19.07■□□□□ 0.64
Col7a1Q63870 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC19.07■□□□□ 0.64
Col7a1Q63870 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col7a1Q63870 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col7a1Q63870 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Col7a1Q63870 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Col7a1Q63870 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC19.06■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms