Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PRKDCP78527 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
PRKDCP78527 RPP21-222ENST00000433076 577 ntTSL 2 BASIC18.21■□□□□ 0.5
PRKDCP78527 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.21■□□□□ 0.5
PRKDCP78527 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PRKDCP78527 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC18.2■□□□□ 0.5
PRKDCP78527 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
PRKDCP78527 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.2■□□□□ 0.5
PRKDCP78527 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC18.2■□□□□ 0.5
PRKDCP78527 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PRKDCP78527 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PRKDCP78527 SRR-208ENST00000576848 588 ntTSL 4 BASIC18.19■□□□□ 0.5
PRKDCP78527 AL512631.2-201ENST00000604634 923 ntBASIC18.19■□□□□ 0.5
PRKDCP78527 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.19■□□□□ 0.5
PRKDCP78527 AL162430.1-201ENST00000480705 870 ntBASIC18.18■□□□□ 0.5
PRKDCP78527 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PRKDCP78527 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PRKDCP78527 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PRKDCP78527 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
PRKDCP78527 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.18■□□□□ 0.5
PRKDCP78527 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PRKDCP78527 BX664725.1-201ENST00000438252 379 ntBASIC18.17■□□□□ 0.5
PRKDCP78527 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC18.17■□□□□ 0.5
PRKDCP78527 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PRKDCP78527 AC090192.1-201ENST00000517740 490 ntBASIC18.17■□□□□ 0.5
PRKDCP78527 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
PRKDCP78527 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PRKDCP78527 SUDS3P1-201ENST00000505831 966 ntBASIC18.16■□□□□ 0.5
PRKDCP78527 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PRKDCP78527 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.16■□□□□ 0.5
PRKDCP78527 MIR3621-201ENST00000580529 85 ntBASIC18.16■□□□□ 0.5
PRKDCP78527 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC18.16■□□□□ 0.5
PRKDCP78527 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
PRKDCP78527 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PRKDCP78527 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PRKDCP78527 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC18.14■□□□□ 0.5
PRKDCP78527 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PRKDCP78527 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PRKDCP78527 MIR6821-201ENST00000617625 74 ntBASIC18.14■□□□□ 0.49
PRKDCP78527 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
PRKDCP78527 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC18.13■□□□□ 0.49
PRKDCP78527 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC18.13■□□□□ 0.49
PRKDCP78527 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PRKDCP78527 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
PRKDCP78527 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC18.13■□□□□ 0.49
PRKDCP78527 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PRKDCP78527 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC18.13■□□□□ 0.49
PRKDCP78527 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PRKDCP78527 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.13■□□□□ 0.49
PRKDCP78527 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PRKDCP78527 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PRKDCP78527 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PRKDCP78527 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PRKDCP78527 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PRKDCP78527 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
PRKDCP78527 AC022616.5-201ENST00000518796 181 ntBASIC18.11■□□□□ 0.49
PRKDCP78527 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.11■□□□□ 0.49
PRKDCP78527 AC092028.1-203ENST00000608262 953 ntBASIC18.11■□□□□ 0.49
PRKDCP78527 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PRKDCP78527 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PRKDCP78527 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
PRKDCP78527 QDPR-206ENST00000508623 601 ntTSL 3 BASIC18.11■□□□□ 0.49
PRKDCP78527 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
PRKDCP78527 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
PRKDCP78527 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PRKDCP78527 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PRKDCP78527 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
PRKDCP78527 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PRKDCP78527 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.1■□□□□ 0.49
PRKDCP78527 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PRKDCP78527 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.1■□□□□ 0.49
PRKDCP78527 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.09■□□□□ 0.49
PRKDCP78527 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC18.09■□□□□ 0.49
PRKDCP78527 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PRKDCP78527 TSPY9P-201ENST00000440215 945 ntBASIC18.09■□□□□ 0.49
PRKDCP78527 TSPY11P-201ENST00000442607 1045 ntBASIC18.09■□□□□ 0.49
PRKDCP78527 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.09■□□□□ 0.49
PRKDCP78527 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC18.09■□□□□ 0.49
PRKDCP78527 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PRKDCP78527 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC18.08■□□□□ 0.49
PRKDCP78527 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC18.08■□□□□ 0.49
PRKDCP78527 AC021242.3-201ENST00000607598 1377 ntBASIC18.08■□□□□ 0.48
PRKDCP78527 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PRKDCP78527 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PRKDCP78527 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PRKDCP78527 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PRKDCP78527 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC18.07■□□□□ 0.48
PRKDCP78527 AC087623.3-201ENST00000607047 1098 ntBASIC18.07■□□□□ 0.48
PRKDCP78527 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PRKDCP78527 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PRKDCP78527 AC137630.3-201ENST00000607245 391 ntBASIC18.07■□□□□ 0.48
PRKDCP78527 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PRKDCP78527 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PRKDCP78527 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
PRKDCP78527 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.06■□□□□ 0.48
PRKDCP78527 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PRKDCP78527 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PRKDCP78527 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.06■□□□□ 0.48
PRKDCP78527 AL135925.1-201ENST00000605920 1701 ntBASIC18.06■□□□□ 0.48
PRKDCP78527 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms