Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ABCA4P78363 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC21.15■□□□□ 0.98
ABCA4P78363 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.15■□□□□ 0.98
ABCA4P78363 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
ABCA4P78363 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.15■□□□□ 0.98
ABCA4P78363 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.15■□□□□ 0.98
ABCA4P78363 AL359504.2-201ENST00000605506 1601 ntBASIC21.14■□□□□ 0.98
ABCA4P78363 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ABCA4P78363 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.13■□□□□ 0.97
ABCA4P78363 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ABCA4P78363 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
ABCA4P78363 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
ABCA4P78363 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ABCA4P78363 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC21.13■□□□□ 0.97
ABCA4P78363 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.12■□□□□ 0.97
ABCA4P78363 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.12■□□□□ 0.97
ABCA4P78363 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
ABCA4P78363 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ABCA4P78363 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.12■□□□□ 0.97
ABCA4P78363 AC018755.3-202ENST00000596210 929 ntBASIC21.12■□□□□ 0.97
ABCA4P78363 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ABCA4P78363 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ABCA4P78363 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.11■□□□□ 0.97
ABCA4P78363 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ABCA4P78363 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.11■□□□□ 0.97
ABCA4P78363 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
ABCA4P78363 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ABCA4P78363 ST7-205ENST00000393446 2114 ntTSL 5 BASIC21.11■□□□□ 0.97
ABCA4P78363 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ABCA4P78363 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.1■□□□□ 0.97
ABCA4P78363 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ABCA4P78363 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
ABCA4P78363 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ABCA4P78363 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
ABCA4P78363 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.09■□□□□ 0.97
ABCA4P78363 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
ABCA4P78363 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.08■□□□□ 0.97
ABCA4P78363 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.08■□□□□ 0.97
ABCA4P78363 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.08■□□□□ 0.97
ABCA4P78363 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.08■□□□□ 0.97
ABCA4P78363 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ABCA4P78363 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ABCA4P78363 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ABCA4P78363 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
ABCA4P78363 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
ABCA4P78363 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.07■□□□□ 0.96
ABCA4P78363 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.07■□□□□ 0.96
ABCA4P78363 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
ABCA4P78363 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ABCA4P78363 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
ABCA4P78363 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.06■□□□□ 0.96
ABCA4P78363 ST7-202ENST00000323984 2142 ntTSL 5 BASIC21.06■□□□□ 0.96
ABCA4P78363 ST7-207ENST00000393449 2127 ntTSL 5 BASIC21.06■□□□□ 0.96
ABCA4P78363 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
ABCA4P78363 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ABCA4P78363 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ABCA4P78363 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.06■□□□□ 0.96
ABCA4P78363 AC087393.1-201ENST00000582896 145 ntBASIC21.06■□□□□ 0.96
ABCA4P78363 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.06■□□□□ 0.96
ABCA4P78363 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
ABCA4P78363 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
ABCA4P78363 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.05■□□□□ 0.96
ABCA4P78363 Z92544.1-202ENST00000571933 1220 ntBASIC21.05■□□□□ 0.96
ABCA4P78363 AL031848.2-201ENST00000607670 837 ntBASIC21.05■□□□□ 0.96
ABCA4P78363 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ABCA4P78363 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.04■□□□□ 0.96
ABCA4P78363 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.04■□□□□ 0.96
ABCA4P78363 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ABCA4P78363 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ABCA4P78363 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
ABCA4P78363 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ABCA4P78363 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ABCA4P78363 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ABCA4P78363 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.03■□□□□ 0.96
ABCA4P78363 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.03■□□□□ 0.96
ABCA4P78363 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.03■□□□□ 0.96
ABCA4P78363 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
ABCA4P78363 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ABCA4P78363 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
ABCA4P78363 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.03■□□□□ 0.96
ABCA4P78363 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
ABCA4P78363 AC239859.2-201ENST00000444165 318 ntBASIC21.02■□□□□ 0.96
ABCA4P78363 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ABCA4P78363 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
ABCA4P78363 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ABCA4P78363 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.01■□□□□ 0.95
ABCA4P78363 AC019171.1-201ENST00000601251 1056 ntBASIC21.01■□□□□ 0.95
ABCA4P78363 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
ABCA4P78363 LINC01003-201ENST00000564834 1764 ntBASIC21.01■□□□□ 0.95
ABCA4P78363 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
ABCA4P78363 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
ABCA4P78363 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
ABCA4P78363 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21■□□□□ 0.95
ABCA4P78363 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ABCA4P78363 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ABCA4P78363 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
ABCA4P78363 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ABCA4P78363 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
ABCA4P78363 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
ABCA4P78363 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms