Protein–RNA interactions for Protein: P35582

Foxa1, Hepatocyte nuclear factor 3-alpha, mousemouse

Predictions only

Length 468 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Foxa1P35582 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Foxa1P35582 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Foxa1P35582 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Foxa1P35582 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Foxa1P35582 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Foxa1P35582 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Foxa1P35582 Gm14523-201ENSMUST00000117260 558 ntBASIC20.46■□□□□ 0.87
Foxa1P35582 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC20.46■□□□□ 0.87
Foxa1P35582 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.46■□□□□ 0.87
Foxa1P35582 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Foxa1P35582 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Foxa1P35582 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.46■□□□□ 0.87
Foxa1P35582 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Foxa1P35582 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Foxa1P35582 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC20.45■□□□□ 0.86
Foxa1P35582 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Foxa1P35582 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.45■□□□□ 0.86
Foxa1P35582 Gm12366-201ENSMUST00000121722 873 ntBASIC20.45■□□□□ 0.86
Foxa1P35582 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.45■□□□□ 0.86
Foxa1P35582 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
Foxa1P35582 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.45■□□□□ 0.86
Foxa1P35582 Gm5786-201ENSMUST00000085368 882 ntBASIC20.45■□□□□ 0.86
Foxa1P35582 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Foxa1P35582 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.44■□□□□ 0.86
Foxa1P35582 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Foxa1P35582 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Foxa1P35582 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Foxa1P35582 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.43■□□□□ 0.86
Foxa1P35582 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Foxa1P35582 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Foxa1P35582 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Foxa1P35582 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.43■□□□□ 0.86
Foxa1P35582 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Foxa1P35582 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Foxa1P35582 Gm7332-201ENSMUST00000118351 454 ntBASIC20.42■□□□□ 0.86
Foxa1P35582 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.41■□□□□ 0.86
Foxa1P35582 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Foxa1P35582 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Foxa1P35582 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Foxa1P35582 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Foxa1P35582 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Foxa1P35582 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Foxa1P35582 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Foxa1P35582 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.4■□□□□ 0.86
Foxa1P35582 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Foxa1P35582 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Foxa1P35582 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Foxa1P35582 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Foxa1P35582 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Foxa1P35582 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Foxa1P35582 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.39■□□□□ 0.85
Foxa1P35582 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Foxa1P35582 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Foxa1P35582 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Foxa1P35582 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.39■□□□□ 0.85
Foxa1P35582 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Foxa1P35582 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Foxa1P35582 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Foxa1P35582 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Foxa1P35582 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Foxa1P35582 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
Foxa1P35582 Cap2-205ENSMUST00000225824 1634 ntBASIC20.38■□□□□ 0.85
Foxa1P35582 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Foxa1P35582 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Foxa1P35582 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.37■□□□□ 0.85
Foxa1P35582 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Foxa1P35582 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.37■□□□□ 0.85
Foxa1P35582 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Foxa1P35582 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Foxa1P35582 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Foxa1P35582 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Foxa1P35582 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.36■□□□□ 0.85
Foxa1P35582 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.36■□□□□ 0.85
Foxa1P35582 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Foxa1P35582 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC20.36■□□□□ 0.85
Foxa1P35582 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
Foxa1P35582 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Foxa1P35582 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Foxa1P35582 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.35■□□□□ 0.85
Foxa1P35582 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Foxa1P35582 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Foxa1P35582 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Foxa1P35582 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Foxa1P35582 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
Foxa1P35582 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Foxa1P35582 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Foxa1P35582 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Foxa1P35582 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Foxa1P35582 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.34■□□□□ 0.85
Foxa1P35582 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Foxa1P35582 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
Foxa1P35582 Gm28731-201ENSMUST00000185564 1569 ntBASIC20.34■□□□□ 0.85
Foxa1P35582 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Foxa1P35582 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Foxa1P35582 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Foxa1P35582 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Foxa1P35582 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Foxa1P35582 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC20.32■□□□□ 0.84
Foxa1P35582 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Foxa1P35582 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms