Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.81■■□□□ 1.4
SHMT2P34897 PFN2-211ENST00000489155 636 ntTSL 4 BASIC23.81■■□□□ 1.4
SHMT2P34897 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SHMT2P34897 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.8■■□□□ 1.4
SHMT2P34897 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SHMT2P34897 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SHMT2P34897 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SHMT2P34897 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.8■■□□□ 1.4
SHMT2P34897 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SHMT2P34897 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.79■■□□□ 1.4
SHMT2P34897 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SHMT2P34897 MIR3960-201ENST00000583311 91 ntBASIC23.79■■□□□ 1.4
SHMT2P34897 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.79■■□□□ 1.4
SHMT2P34897 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SHMT2P34897 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SHMT2P34897 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
SHMT2P34897 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SHMT2P34897 AC142472.1-201ENST00000612013 1741 ntBASIC23.77■■□□□ 1.4
SHMT2P34897 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC23.77■■□□□ 1.4
SHMT2P34897 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SHMT2P34897 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.77■■□□□ 1.4
SHMT2P34897 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SHMT2P34897 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
SHMT2P34897 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.76■■□□□ 1.39
SHMT2P34897 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SHMT2P34897 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SHMT2P34897 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.76■■□□□ 1.39
SHMT2P34897 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SHMT2P34897 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SHMT2P34897 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
SHMT2P34897 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.75■■□□□ 1.39
SHMT2P34897 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SHMT2P34897 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.75■■□□□ 1.39
SHMT2P34897 RP9P-202ENST00000450133 1212 ntBASIC23.75■■□□□ 1.39
SHMT2P34897 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
SHMT2P34897 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.75■■□□□ 1.39
SHMT2P34897 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
SHMT2P34897 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
SHMT2P34897 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
SHMT2P34897 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.74■■□□□ 1.39
SHMT2P34897 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.74■■□□□ 1.39
SHMT2P34897 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC23.74■■□□□ 1.39
SHMT2P34897 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SHMT2P34897 AP004609.3-201ENST00000610705 1884 ntBASIC23.74■■□□□ 1.39
SHMT2P34897 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SHMT2P34897 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
SHMT2P34897 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
SHMT2P34897 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SHMT2P34897 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
SHMT2P34897 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.73■■□□□ 1.39
SHMT2P34897 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
SHMT2P34897 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
SHMT2P34897 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
SHMT2P34897 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.72■■□□□ 1.39
SHMT2P34897 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
SHMT2P34897 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SHMT2P34897 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHMT2P34897 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
SHMT2P34897 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SHMT2P34897 AC093536.1-201ENST00000569153 554 ntBASIC23.71■■□□□ 1.39
SHMT2P34897 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SHMT2P34897 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
SHMT2P34897 NTF6A-201ENST00000591175 560 ntBASIC23.7■■□□□ 1.38
SHMT2P34897 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.7■■□□□ 1.38
SHMT2P34897 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SHMT2P34897 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC23.69■■□□□ 1.38
SHMT2P34897 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
SHMT2P34897 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SHMT2P34897 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.69■■□□□ 1.38
SHMT2P34897 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHMT2P34897 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHMT2P34897 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SHMT2P34897 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHMT2P34897 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHMT2P34897 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHMT2P34897 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHMT2P34897 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SHMT2P34897 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.68■■□□□ 1.38
SHMT2P34897 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHMT2P34897 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.68■■□□□ 1.38
SHMT2P34897 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC23.68■■□□□ 1.38
SHMT2P34897 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SHMT2P34897 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.67■■□□□ 1.38
SHMT2P34897 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SHMT2P34897 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.67■■□□□ 1.38
SHMT2P34897 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SHMT2P34897 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SHMT2P34897 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SHMT2P34897 U85056.1-201ENST00000616429 682 ntBASIC23.67■■□□□ 1.38
SHMT2P34897 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SHMT2P34897 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SHMT2P34897 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SHMT2P34897 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.66■■□□□ 1.38
SHMT2P34897 HES4-204ENST00000484667 667 ntTSL 3 BASIC23.66■■□□□ 1.38
SHMT2P34897 AC026202.3-201ENST00000600805 1127 ntBASIC23.66■■□□□ 1.38
SHMT2P34897 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
SHMT2P34897 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.65■■□□□ 1.38
SHMT2P34897 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.65■■□□□ 1.38
SHMT2P34897 AC009831.1-201ENST00000580420 1582 ntBASIC23.65■■□□□ 1.38
SHMT2P34897 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms