Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.18■□□□□ 0.82
Cd40lgP27548 Gm12366-201ENSMUST00000121722 873 ntBASIC20.18■□□□□ 0.82
Cd40lgP27548 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.18■□□□□ 0.82
Cd40lgP27548 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cd40lgP27548 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC20.18■□□□□ 0.82
Cd40lgP27548 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cd40lgP27548 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.18■□□□□ 0.82
Cd40lgP27548 Gm5786-201ENSMUST00000085368 882 ntBASIC20.18■□□□□ 0.82
Cd40lgP27548 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.18■□□□□ 0.82
Cd40lgP27548 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cd40lgP27548 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Cd40lgP27548 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Cd40lgP27548 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.18■□□□□ 0.82
Cd40lgP27548 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Cd40lgP27548 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cd40lgP27548 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cd40lgP27548 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Cd40lgP27548 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cd40lgP27548 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
Cd40lgP27548 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cd40lgP27548 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.16■□□□□ 0.82
Cd40lgP27548 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cd40lgP27548 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cd40lgP27548 Gm27502-201ENSMUST00000183495 199 ntBASIC20.16■□□□□ 0.82
Cd40lgP27548 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Cd40lgP27548 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.16■□□□□ 0.82
Cd40lgP27548 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cd40lgP27548 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cd40lgP27548 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cd40lgP27548 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cd40lgP27548 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cd40lgP27548 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Cd40lgP27548 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
Cd40lgP27548 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Cd40lgP27548 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Cd40lgP27548 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Cd40lgP27548 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cd40lgP27548 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cd40lgP27548 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cd40lgP27548 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cd40lgP27548 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cd40lgP27548 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Cd40lgP27548 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cd40lgP27548 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.13■□□□□ 0.81
Cd40lgP27548 Gm7332-201ENSMUST00000118351 454 ntBASIC20.13■□□□□ 0.81
Cd40lgP27548 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cd40lgP27548 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cd40lgP27548 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.12■□□□□ 0.81
Cd40lgP27548 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cd40lgP27548 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Cd40lgP27548 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Cd40lgP27548 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Cd40lgP27548 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cd40lgP27548 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cd40lgP27548 Gm14523-201ENSMUST00000117260 558 ntBASIC20.11■□□□□ 0.81
Cd40lgP27548 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.11■□□□□ 0.81
Cd40lgP27548 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.11■□□□□ 0.81
Cd40lgP27548 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cd40lgP27548 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cd40lgP27548 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cd40lgP27548 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Cd40lgP27548 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Cd40lgP27548 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cd40lgP27548 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cd40lgP27548 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cd40lgP27548 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cd40lgP27548 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Cd40lgP27548 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cd40lgP27548 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Cd40lgP27548 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Cd40lgP27548 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
Cd40lgP27548 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
Cd40lgP27548 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Cd40lgP27548 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cd40lgP27548 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cd40lgP27548 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.07■□□□□ 0.8
Cd40lgP27548 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cd40lgP27548 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Cd40lgP27548 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cd40lgP27548 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cd40lgP27548 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cd40lgP27548 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Cd40lgP27548 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Cd40lgP27548 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.06■□□□□ 0.8
Cd40lgP27548 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cd40lgP27548 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cd40lgP27548 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cd40lgP27548 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cd40lgP27548 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Cd40lgP27548 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cd40lgP27548 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cd40lgP27548 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.04■□□□□ 0.8
Cd40lgP27548 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.04■□□□□ 0.8
Cd40lgP27548 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.04■□□□□ 0.8
Cd40lgP27548 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cd40lgP27548 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cd40lgP27548 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cd40lgP27548 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.03■□□□□ 0.8
Cd40lgP27548 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cd40lgP27548 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms