Protein–RNA interactions for Protein: O95238

SPDEF, SAM pointed domain-containing Ets transcription factor, humanhuman

Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPDEFO95238 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SPDEFO95238 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SPDEFO95238 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SPDEFO95238 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SPDEFO95238 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC20.45■□□□□ 0.86
SPDEFO95238 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SPDEFO95238 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SPDEFO95238 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SPDEFO95238 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SPDEFO95238 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.44■□□□□ 0.86
SPDEFO95238 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SPDEFO95238 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC20.44■□□□□ 0.86
SPDEFO95238 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.44■□□□□ 0.86
SPDEFO95238 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.44■□□□□ 0.86
SPDEFO95238 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SPDEFO95238 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SPDEFO95238 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
SPDEFO95238 WHAMMP2-203ENST00000563942 1603 ntBASIC20.43■□□□□ 0.86
SPDEFO95238 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SPDEFO95238 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SPDEFO95238 AC100797.4-201ENST00000631653 1827 ntBASIC20.43■□□□□ 0.86
SPDEFO95238 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.43■□□□□ 0.86
SPDEFO95238 AC012676.1-201ENST00000574705 1949 ntBASIC20.43■□□□□ 0.86
SPDEFO95238 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SPDEFO95238 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SPDEFO95238 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SPDEFO95238 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC20.42■□□□□ 0.86
SPDEFO95238 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.42■□□□□ 0.86
SPDEFO95238 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
SPDEFO95238 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SPDEFO95238 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SPDEFO95238 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC20.42■□□□□ 0.86
SPDEFO95238 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SPDEFO95238 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
SPDEFO95238 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.41■□□□□ 0.86
SPDEFO95238 DUX4L29-201ENST00000425409 679 ntBASIC20.41■□□□□ 0.86
SPDEFO95238 RPS2P35-201ENST00000443417 897 ntBASIC20.41■□□□□ 0.86
SPDEFO95238 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SPDEFO95238 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
SPDEFO95238 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
SPDEFO95238 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
SPDEFO95238 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SPDEFO95238 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SPDEFO95238 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SPDEFO95238 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SPDEFO95238 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
SPDEFO95238 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SPDEFO95238 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SPDEFO95238 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
SPDEFO95238 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SPDEFO95238 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
SPDEFO95238 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SPDEFO95238 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SPDEFO95238 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
SPDEFO95238 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SPDEFO95238 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SPDEFO95238 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
SPDEFO95238 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SPDEFO95238 AP002414.2-202ENST00000590929 1450 ntBASIC20.38■□□□□ 0.85
SPDEFO95238 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SPDEFO95238 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SPDEFO95238 AC021231.2-201ENST00000594613 730 ntBASIC20.38■□□□□ 0.85
SPDEFO95238 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SPDEFO95238 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
SPDEFO95238 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SPDEFO95238 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SPDEFO95238 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SPDEFO95238 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SPDEFO95238 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC20.36■□□□□ 0.85
SPDEFO95238 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.36■□□□□ 0.85
SPDEFO95238 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SPDEFO95238 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SPDEFO95238 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SPDEFO95238 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.36■□□□□ 0.85
SPDEFO95238 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SPDEFO95238 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.35■□□□□ 0.85
SPDEFO95238 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.35■□□□□ 0.85
SPDEFO95238 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SPDEFO95238 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SPDEFO95238 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SPDEFO95238 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SPDEFO95238 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SPDEFO95238 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SPDEFO95238 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
SPDEFO95238 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.34■□□□□ 0.85
SPDEFO95238 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.34■□□□□ 0.85
SPDEFO95238 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SPDEFO95238 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SPDEFO95238 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SPDEFO95238 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SPDEFO95238 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.33■□□□□ 0.85
SPDEFO95238 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SPDEFO95238 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SPDEFO95238 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SPDEFO95238 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SPDEFO95238 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SPDEFO95238 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SPDEFO95238 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SPDEFO95238 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SPDEFO95238 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms