Protein–RNA interactions for Protein: O88696

Clpp, ATP-dependent Clp protease proteolytic subunit, mitochondrial, mousemouse

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClppO88696 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ClppO88696 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ClppO88696 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ClppO88696 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ClppO88696 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ClppO88696 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ClppO88696 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ClppO88696 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ClppO88696 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC21.45■■□□□ 1.02
ClppO88696 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC21.45■■□□□ 1.02
ClppO88696 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
ClppO88696 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
ClppO88696 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
ClppO88696 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
ClppO88696 Gm38160-201ENSMUST00000193090 2499 ntBASIC21.44■■□□□ 1.02
ClppO88696 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC21.44■■□□□ 1.02
ClppO88696 Gm5921-201ENSMUST00000075898 882 ntBASIC21.44■■□□□ 1.02
ClppO88696 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
ClppO88696 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ClppO88696 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
ClppO88696 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
ClppO88696 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
ClppO88696 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
ClppO88696 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
ClppO88696 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC21.42■■□□□ 1.02
ClppO88696 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
ClppO88696 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC21.42■■□□□ 1.02
ClppO88696 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
ClppO88696 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
ClppO88696 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
ClppO88696 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
ClppO88696 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
ClppO88696 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
ClppO88696 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ClppO88696 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
ClppO88696 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
ClppO88696 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
ClppO88696 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ClppO88696 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ClppO88696 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ClppO88696 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ClppO88696 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC21.38■■□□□ 1.01
ClppO88696 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
ClppO88696 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
ClppO88696 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
ClppO88696 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ClppO88696 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.37■■□□□ 1.01
ClppO88696 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ClppO88696 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ClppO88696 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ClppO88696 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
ClppO88696 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ClppO88696 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC21.36■■□□□ 1.01
ClppO88696 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC21.36■■□□□ 1.01
ClppO88696 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ClppO88696 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ClppO88696 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ClppO88696 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ClppO88696 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC21.35■■□□□ 1.01
ClppO88696 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
ClppO88696 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ClppO88696 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ClppO88696 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ClppO88696 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ClppO88696 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
ClppO88696 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
ClppO88696 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
ClppO88696 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
ClppO88696 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC21.33■■□□□ 1.01
ClppO88696 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
ClppO88696 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
ClppO88696 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC21.33■■□□□ 1
ClppO88696 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1
ClppO88696 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
ClppO88696 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
ClppO88696 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ClppO88696 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC21.32■■□□□ 1
ClppO88696 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC21.32■■□□□ 1
ClppO88696 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.32■■□□□ 1
ClppO88696 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
ClppO88696 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ClppO88696 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.31■■□□□ 1
ClppO88696 AC117769.4-201ENSMUST00000225679 685 ntBASIC21.31■■□□□ 1
ClppO88696 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC21.31■■□□□ 1
ClppO88696 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ClppO88696 Gm5812-201ENSMUST00000061073 957 ntBASIC21.3■■□□□ 1
ClppO88696 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ClppO88696 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC21.3■■□□□ 1
ClppO88696 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
ClppO88696 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ClppO88696 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC21.29■■□□□ 1
ClppO88696 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC21.29■■□□□ 1
ClppO88696 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
ClppO88696 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
ClppO88696 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
ClppO88696 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC21.29■■□□□ 1
ClppO88696 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ClppO88696 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
ClppO88696 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC21.28■■□□□ 1
ClppO88696 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 122.4 ms