Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC16.25■□□□□ 0.19
Trav16d-dv11A0A075B617 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Trav16d-dv11A0A075B617 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC16.25■□□□□ 0.19
Trav16d-dv11A0A075B617 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav16d-dv11A0A075B617 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav16d-dv11A0A075B617 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Trav16d-dv11A0A075B617 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC16.24■□□□□ 0.19
Trav16d-dv11A0A075B617 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav16d-dv11A0A075B617 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav16d-dv11A0A075B617 Gm14121-201ENSMUST00000121441 1380 ntBASIC16.24■□□□□ 0.19
Trav16d-dv11A0A075B617 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Trav16d-dv11A0A075B617 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav16d-dv11A0A075B617 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Trav16d-dv11A0A075B617 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav16d-dv11A0A075B617 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Trav16d-dv11A0A075B617 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav16d-dv11A0A075B617 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav16d-dv11A0A075B617 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav16d-dv11A0A075B617 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav16d-dv11A0A075B617 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC16.22■□□□□ 0.19
Trav16d-dv11A0A075B617 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav16d-dv11A0A075B617 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav16d-dv11A0A075B617 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC16.22■□□□□ 0.19
Trav16d-dv11A0A075B617 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav16d-dv11A0A075B617 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Trav16d-dv11A0A075B617 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav16d-dv11A0A075B617 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav16d-dv11A0A075B617 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav16d-dv11A0A075B617 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trav16d-dv11A0A075B617 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Trav16d-dv11A0A075B617 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav16d-dv11A0A075B617 Gm4419-202ENSMUST00000226239 1431 ntBASIC16.21■□□□□ 0.19
Trav16d-dv11A0A075B617 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav16d-dv11A0A075B617 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
Trav16d-dv11A0A075B617 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trav16d-dv11A0A075B617 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav16d-dv11A0A075B617 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav16d-dv11A0A075B617 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Trav16d-dv11A0A075B617 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav16d-dv11A0A075B617 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav16d-dv11A0A075B617 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC16.2■□□□□ 0.18
Trav16d-dv11A0A075B617 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC16.2■□□□□ 0.18
Trav16d-dv11A0A075B617 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trav16d-dv11A0A075B617 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav16d-dv11A0A075B617 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trav16d-dv11A0A075B617 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav16d-dv11A0A075B617 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav16d-dv11A0A075B617 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav16d-dv11A0A075B617 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trav16d-dv11A0A075B617 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trav16d-dv11A0A075B617 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
Trav16d-dv11A0A075B617 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav16d-dv11A0A075B617 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
Trav16d-dv11A0A075B617 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav16d-dv11A0A075B617 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav16d-dv11A0A075B617 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Trav16d-dv11A0A075B617 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC16.18■□□□□ 0.18
Trav16d-dv11A0A075B617 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav16d-dv11A0A075B617 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC16.18■□□□□ 0.18
Trav16d-dv11A0A075B617 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav16d-dv11A0A075B617 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav16d-dv11A0A075B617 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav16d-dv11A0A075B617 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Trav16d-dv11A0A075B617 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav16d-dv11A0A075B617 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Trav16d-dv11A0A075B617 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Trav16d-dv11A0A075B617 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Trav16d-dv11A0A075B617 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav16d-dv11A0A075B617 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC16.16■□□□□ 0.18
Trav16d-dv11A0A075B617 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav16d-dv11A0A075B617 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav16d-dv11A0A075B617 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav16d-dv11A0A075B617 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav16d-dv11A0A075B617 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Trav16d-dv11A0A075B617 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Trav16d-dv11A0A075B617 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav16d-dv11A0A075B617 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
Trav16d-dv11A0A075B617 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav16d-dv11A0A075B617 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trav16d-dv11A0A075B617 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Trav16d-dv11A0A075B617 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
Trav16d-dv11A0A075B617 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC16.14■□□□□ 0.17
Trav16d-dv11A0A075B617 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav16d-dv11A0A075B617 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav16d-dv11A0A075B617 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav16d-dv11A0A075B617 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav16d-dv11A0A075B617 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav16d-dv11A0A075B617 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Trav16d-dv11A0A075B617 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav16d-dv11A0A075B617 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Trav16d-dv11A0A075B617 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav16d-dv11A0A075B617 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC16.13■□□□□ 0.17
Trav16d-dv11A0A075B617 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav16d-dv11A0A075B617 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Trav16d-dv11A0A075B617 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trav16d-dv11A0A075B617 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Trav16d-dv11A0A075B617 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav16d-dv11A0A075B617 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav16d-dv11A0A075B617 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Trav16d-dv11A0A075B617 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms