Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHB3Q9Y5E6 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.95■■□□□ 1.43
PCDHB3Q9Y5E6 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
PCDHB3Q9Y5E6 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
PCDHB3Q9Y5E6 AL449106.1-201ENST00000608517 1980 ntBASIC23.95■■□□□ 1.42
PCDHB3Q9Y5E6 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.95■■□□□ 1.42
PCDHB3Q9Y5E6 AC126177.7-201ENST00000547904 679 ntBASIC23.95■■□□□ 1.42
PCDHB3Q9Y5E6 AP002414.2-202ENST00000590929 1450 ntBASIC23.94■■□□□ 1.42
PCDHB3Q9Y5E6 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHB3Q9Y5E6 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
PCDHB3Q9Y5E6 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.94■■□□□ 1.42
PCDHB3Q9Y5E6 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHB3Q9Y5E6 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHB3Q9Y5E6 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHB3Q9Y5E6 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHB3Q9Y5E6 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHB3Q9Y5E6 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
PCDHB3Q9Y5E6 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.92■■□□□ 1.42
PCDHB3Q9Y5E6 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHB3Q9Y5E6 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
PCDHB3Q9Y5E6 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHB3Q9Y5E6 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHB3Q9Y5E6 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.9■■□□□ 1.42
PCDHB3Q9Y5E6 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.9■■□□□ 1.42
PCDHB3Q9Y5E6 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHB3Q9Y5E6 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
PCDHB3Q9Y5E6 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
PCDHB3Q9Y5E6 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
PCDHB3Q9Y5E6 AC092296.2-201ENST00000589470 999 ntBASIC23.89■■□□□ 1.41
PCDHB3Q9Y5E6 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
PCDHB3Q9Y5E6 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHB3Q9Y5E6 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHB3Q9Y5E6 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHB3Q9Y5E6 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHB3Q9Y5E6 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHB3Q9Y5E6 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHB3Q9Y5E6 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.87■■□□□ 1.41
PCDHB3Q9Y5E6 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
PCDHB3Q9Y5E6 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.87■■□□□ 1.41
PCDHB3Q9Y5E6 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHB3Q9Y5E6 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHB3Q9Y5E6 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHB3Q9Y5E6 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.87■■□□□ 1.41
PCDHB3Q9Y5E6 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHB3Q9Y5E6 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.87■■□□□ 1.41
PCDHB3Q9Y5E6 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHB3Q9Y5E6 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.87■■□□□ 1.41
PCDHB3Q9Y5E6 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHB3Q9Y5E6 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.86■■□□□ 1.41
PCDHB3Q9Y5E6 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHB3Q9Y5E6 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHB3Q9Y5E6 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.86■■□□□ 1.41
PCDHB3Q9Y5E6 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHB3Q9Y5E6 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHB3Q9Y5E6 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.85■■□□□ 1.41
PCDHB3Q9Y5E6 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHB3Q9Y5E6 AC091060.1-201ENST00000623524 1766 ntBASIC23.85■■□□□ 1.41
PCDHB3Q9Y5E6 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.84■■□□□ 1.41
PCDHB3Q9Y5E6 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHB3Q9Y5E6 ECEL1P2-201ENST00000461596 1295 ntBASIC23.84■■□□□ 1.41
PCDHB3Q9Y5E6 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHB3Q9Y5E6 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
PCDHB3Q9Y5E6 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.83■■□□□ 1.41
PCDHB3Q9Y5E6 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.83■■□□□ 1.41
PCDHB3Q9Y5E6 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
PCDHB3Q9Y5E6 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.83■■□□□ 1.41
PCDHB3Q9Y5E6 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.4
PCDHB3Q9Y5E6 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHB3Q9Y5E6 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
PCDHB3Q9Y5E6 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHB3Q9Y5E6 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHB3Q9Y5E6 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHB3Q9Y5E6 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
PCDHB3Q9Y5E6 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHB3Q9Y5E6 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHB3Q9Y5E6 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
PCDHB3Q9Y5E6 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHB3Q9Y5E6 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.81■■□□□ 1.4
PCDHB3Q9Y5E6 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHB3Q9Y5E6 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
PCDHB3Q9Y5E6 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHB3Q9Y5E6 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
PCDHB3Q9Y5E6 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHB3Q9Y5E6 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHB3Q9Y5E6 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHB3Q9Y5E6 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
PCDHB3Q9Y5E6 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHB3Q9Y5E6 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHB3Q9Y5E6 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHB3Q9Y5E6 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHB3Q9Y5E6 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHB3Q9Y5E6 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHB3Q9Y5E6 AL033527.3-201ENST00000566366 1196 ntBASIC23.78■■□□□ 1.4
PCDHB3Q9Y5E6 U85056.1-201ENST00000616429 682 ntBASIC23.78■■□□□ 1.4
PCDHB3Q9Y5E6 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHB3Q9Y5E6 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHB3Q9Y5E6 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PCDHB3Q9Y5E6 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
PCDHB3Q9Y5E6 AC018358.1-201ENST00000631079 1402 ntBASIC23.77■■□□□ 1.4
PCDHB3Q9Y5E6 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms