Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC30.34■■■□□ 2.45
ZC3H4Q9UPT8 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
ZC3H4Q9UPT8 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
ZC3H4Q9UPT8 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
ZC3H4Q9UPT8 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
ZC3H4Q9UPT8 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
ZC3H4Q9UPT8 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
ZC3H4Q9UPT8 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC30.32■■■□□ 2.44
ZC3H4Q9UPT8 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC30.32■■■□□ 2.44
ZC3H4Q9UPT8 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC30.32■■■□□ 2.44
ZC3H4Q9UPT8 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
ZC3H4Q9UPT8 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.32■■■□□ 2.44
ZC3H4Q9UPT8 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
ZC3H4Q9UPT8 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
ZC3H4Q9UPT8 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.31■■■□□ 2.44
ZC3H4Q9UPT8 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
ZC3H4Q9UPT8 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC30.3■■■□□ 2.44
ZC3H4Q9UPT8 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC30.3■■■□□ 2.44
ZC3H4Q9UPT8 AL139246.5-201ENST00000606645 996 ntBASIC30.3■■■□□ 2.44
ZC3H4Q9UPT8 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
ZC3H4Q9UPT8 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
ZC3H4Q9UPT8 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
ZC3H4Q9UPT8 LONRF2P2-201ENST00000439212 571 ntBASIC30.27■■■□□ 2.44
ZC3H4Q9UPT8 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
ZC3H4Q9UPT8 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
ZC3H4Q9UPT8 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC30.26■■■□□ 2.44
ZC3H4Q9UPT8 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
ZC3H4Q9UPT8 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC30.25■■■□□ 2.43
ZC3H4Q9UPT8 KRT125P-201ENST00000546827 989 ntBASIC30.25■■■□□ 2.43
ZC3H4Q9UPT8 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
ZC3H4Q9UPT8 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC30.24■■■□□ 2.43
ZC3H4Q9UPT8 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
ZC3H4Q9UPT8 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
ZC3H4Q9UPT8 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
ZC3H4Q9UPT8 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC30.23■■■□□ 2.43
ZC3H4Q9UPT8 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.23■■■□□ 2.43
ZC3H4Q9UPT8 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC30.22■■■□□ 2.43
ZC3H4Q9UPT8 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC30.22■■■□□ 2.43
ZC3H4Q9UPT8 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC30.22■■■□□ 2.43
ZC3H4Q9UPT8 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC30.22■■■□□ 2.43
ZC3H4Q9UPT8 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC30.22■■■□□ 2.43
ZC3H4Q9UPT8 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC30.22■■■□□ 2.43
ZC3H4Q9UPT8 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30.22■■■□□ 2.43
ZC3H4Q9UPT8 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC30.21■■■□□ 2.43
ZC3H4Q9UPT8 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.21■■■□□ 2.43
ZC3H4Q9UPT8 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC30.21■■■□□ 2.43
ZC3H4Q9UPT8 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
ZC3H4Q9UPT8 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
ZC3H4Q9UPT8 AC087393.1-201ENST00000582896 145 ntBASIC30.21■■■□□ 2.43
ZC3H4Q9UPT8 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.2■■■□□ 2.42
ZC3H4Q9UPT8 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC30.2■■■□□ 2.42
ZC3H4Q9UPT8 MIR4787-201ENST00000607364 84 ntBASIC30.2■■■□□ 2.42
ZC3H4Q9UPT8 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC30.19■■■□□ 2.42
ZC3H4Q9UPT8 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
ZC3H4Q9UPT8 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC30.19■■■□□ 2.42
ZC3H4Q9UPT8 RALB-208ENST00000631312 311 ntTSL 5 BASIC30.19■■■□□ 2.42
ZC3H4Q9UPT8 AP004833.2-201ENST00000532228 1454 ntBASIC30.19■■■□□ 2.42
ZC3H4Q9UPT8 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
ZC3H4Q9UPT8 BX664725.1-201ENST00000438252 379 ntBASIC30.18■■■□□ 2.42
ZC3H4Q9UPT8 KRT16P3-201ENST00000439127 1283 ntBASIC30.18■■■□□ 2.42
ZC3H4Q9UPT8 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
ZC3H4Q9UPT8 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
ZC3H4Q9UPT8 UNC93B8-201ENST00000511903 705 ntBASIC30.17■■■□□ 2.42
ZC3H4Q9UPT8 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC30.15■■■□□ 2.42
ZC3H4Q9UPT8 NALT1-201ENST00000429224 738 ntTSL 5 BASIC30.15■■■□□ 2.42
ZC3H4Q9UPT8 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.42
ZC3H4Q9UPT8 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC30.14■■■□□ 2.42
ZC3H4Q9UPT8 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.41
ZC3H4Q9UPT8 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC30.13■■■□□ 2.41
ZC3H4Q9UPT8 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
ZC3H4Q9UPT8 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
ZC3H4Q9UPT8 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
ZC3H4Q9UPT8 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
ZC3H4Q9UPT8 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
ZC3H4Q9UPT8 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC30.11■■■□□ 2.41
ZC3H4Q9UPT8 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
ZC3H4Q9UPT8 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC30.11■■■□□ 2.41
ZC3H4Q9UPT8 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC30.11■■■□□ 2.41
ZC3H4Q9UPT8 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
ZC3H4Q9UPT8 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
ZC3H4Q9UPT8 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
ZC3H4Q9UPT8 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
ZC3H4Q9UPT8 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
ZC3H4Q9UPT8 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC30.1■■■□□ 2.41
ZC3H4Q9UPT8 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC30.1■■■□□ 2.41
ZC3H4Q9UPT8 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
ZC3H4Q9UPT8 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC30.09■■■□□ 2.41
ZC3H4Q9UPT8 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC30.09■■■□□ 2.41
ZC3H4Q9UPT8 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
ZC3H4Q9UPT8 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.09■■■□□ 2.41
ZC3H4Q9UPT8 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC30.09■■■□□ 2.41
ZC3H4Q9UPT8 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
ZC3H4Q9UPT8 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
ZC3H4Q9UPT8 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC30.07■■■□□ 2.4
ZC3H4Q9UPT8 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.06■■■□□ 2.4
ZC3H4Q9UPT8 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC30.06■■■□□ 2.4
ZC3H4Q9UPT8 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC30.06■■■□□ 2.4
ZC3H4Q9UPT8 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
ZC3H4Q9UPT8 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
ZC3H4Q9UPT8 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 129.1 ms