Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC31.68■■■□□ 2.66
USP42Q9H9J4 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
USP42Q9H9J4 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP42Q9H9J4 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC31.67■■■□□ 2.66
USP42Q9H9J4 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP42Q9H9J4 MIR3960-201ENST00000583311 91 ntBASIC31.67■■■□□ 2.66
USP42Q9H9J4 PVT1_1.1-201ENST00000615125 194 ntBASIC31.67■■■□□ 2.66
USP42Q9H9J4 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC31.67■■■□□ 2.66
USP42Q9H9J4 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC31.67■■■□□ 2.66
USP42Q9H9J4 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
USP42Q9H9J4 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC31.66■■■□□ 2.66
USP42Q9H9J4 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
USP42Q9H9J4 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
USP42Q9H9J4 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC31.65■■■□□ 2.66
USP42Q9H9J4 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
USP42Q9H9J4 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC31.65■■■□□ 2.66
USP42Q9H9J4 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
USP42Q9H9J4 AC139795.1-202ENST00000500444 432 ntBASIC31.64■■■□□ 2.66
USP42Q9H9J4 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC31.64■■■□□ 2.66
USP42Q9H9J4 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC31.62■■■□□ 2.65
USP42Q9H9J4 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
USP42Q9H9J4 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC31.6■■■□□ 2.65
USP42Q9H9J4 YBX1P4-201ENST00000392794 808 ntBASIC31.6■■■□□ 2.65
USP42Q9H9J4 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
USP42Q9H9J4 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC31.59■■■□□ 2.65
USP42Q9H9J4 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC31.59■■■□□ 2.65
USP42Q9H9J4 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
USP42Q9H9J4 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC31.59■■■□□ 2.65
USP42Q9H9J4 HES6-204ENST00000409182 863 ntTSL 2 BASIC31.58■■■□□ 2.65
USP42Q9H9J4 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC31.58■■■□□ 2.65
USP42Q9H9J4 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
USP42Q9H9J4 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC31.57■■■□□ 2.64
USP42Q9H9J4 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC31.57■■■□□ 2.64
USP42Q9H9J4 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
USP42Q9H9J4 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
USP42Q9H9J4 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
USP42Q9H9J4 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
USP42Q9H9J4 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
USP42Q9H9J4 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
USP42Q9H9J4 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
USP42Q9H9J4 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC31.56■■■□□ 2.64
USP42Q9H9J4 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC31.56■■■□□ 2.64
USP42Q9H9J4 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC31.56■■■□□ 2.64
USP42Q9H9J4 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
USP42Q9H9J4 GUSBP5-201ENST00000418136 578 ntBASIC31.55■■■□□ 2.64
USP42Q9H9J4 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC31.55■■■□□ 2.64
USP42Q9H9J4 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
USP42Q9H9J4 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.55■■■□□ 2.64
USP42Q9H9J4 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
USP42Q9H9J4 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
USP42Q9H9J4 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC31.54■■■□□ 2.64
USP42Q9H9J4 HYI-210ENST00000486909 905 ntTSL 5 BASIC31.54■■■□□ 2.64
USP42Q9H9J4 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC31.54■■■□□ 2.64
USP42Q9H9J4 MIR4508-201ENST00000584178 70 ntBASIC31.54■■■□□ 2.64
USP42Q9H9J4 MTURN-203ENST00000409688 843 ntTSL 2 BASIC31.53■■■□□ 2.64
USP42Q9H9J4 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC31.53■■■□□ 2.64
USP42Q9H9J4 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC31.53■■■□□ 2.64
USP42Q9H9J4 AC018755.3-202ENST00000596210 929 ntBASIC31.53■■■□□ 2.64
USP42Q9H9J4 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
USP42Q9H9J4 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
USP42Q9H9J4 OR2A1-AS1-204ENST00000470435 602 ntBASIC31.52■■■□□ 2.64
USP42Q9H9J4 AC019069.1-201ENST00000610008 1333 ntBASIC31.52■■■□□ 2.64
USP42Q9H9J4 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
USP42Q9H9J4 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC31.51■■■□□ 2.64
USP42Q9H9J4 AC131212.1-201ENST00000613771 668 ntBASIC31.51■■■□□ 2.64
USP42Q9H9J4 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
USP42Q9H9J4 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC31.51■■■□□ 2.63
USP42Q9H9J4 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC31.5■■■□□ 2.63
USP42Q9H9J4 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
USP42Q9H9J4 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC31.5■■■□□ 2.63
USP42Q9H9J4 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC31.49■■■□□ 2.63
USP42Q9H9J4 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC31.49■■■□□ 2.63
USP42Q9H9J4 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC31.49■■■□□ 2.63
USP42Q9H9J4 IDNK-203ENST00000405990 629 ntTSL 2 BASIC31.49■■■□□ 2.63
USP42Q9H9J4 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
USP42Q9H9J4 THA1P-201ENST00000590384 1145 ntBASIC31.49■■■□□ 2.63
USP42Q9H9J4 SHF-206ENST00000560471 2499 ntTSL 5 BASIC31.48■■■□□ 2.63
USP42Q9H9J4 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC31.48■■■□□ 2.63
USP42Q9H9J4 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC31.48■■■□□ 2.63
USP42Q9H9J4 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
USP42Q9H9J4 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
USP42Q9H9J4 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC31.47■■■□□ 2.63
USP42Q9H9J4 IDNK-201ENST00000376417 511 ntTSL 5 BASIC31.47■■■□□ 2.63
USP42Q9H9J4 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
USP42Q9H9J4 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC31.47■■■□□ 2.63
USP42Q9H9J4 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC31.47■■■□□ 2.63
USP42Q9H9J4 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
USP42Q9H9J4 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC31.46■■■□□ 2.63
USP42Q9H9J4 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC31.46■■■□□ 2.63
USP42Q9H9J4 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
USP42Q9H9J4 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC31.44■■■□□ 2.62
USP42Q9H9J4 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
USP42Q9H9J4 AC103724.3-201ENST00000564481 992 ntBASIC31.44■■■□□ 2.62
USP42Q9H9J4 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC31.44■■■□□ 2.62
USP42Q9H9J4 AP002414.2-202ENST00000590929 1450 ntBASIC31.43■■■□□ 2.62
USP42Q9H9J4 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC31.43■■■□□ 2.62
USP42Q9H9J4 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
USP42Q9H9J4 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC31.43■■■□□ 2.62
USP42Q9H9J4 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
USP42Q9H9J4 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms