Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SHROOM3Q8TF72 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SHROOM3Q8TF72 AP004609.3-201ENST00000610705 1884 ntBASIC25.22■■□□□ 1.63
SHROOM3Q8TF72 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SHROOM3Q8TF72 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SHROOM3Q8TF72 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
SHROOM3Q8TF72 ABHD17AP5-201ENST00000580133 923 ntBASIC25.2■■□□□ 1.63
SHROOM3Q8TF72 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC25.2■■□□□ 1.62
SHROOM3Q8TF72 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
SHROOM3Q8TF72 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC25.19■■□□□ 1.62
SHROOM3Q8TF72 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
SHROOM3Q8TF72 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC25.19■■□□□ 1.62
SHROOM3Q8TF72 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SHROOM3Q8TF72 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SHROOM3Q8TF72 AC092296.2-201ENST00000589470 999 ntBASIC25.18■■□□□ 1.62
SHROOM3Q8TF72 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SHROOM3Q8TF72 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
SHROOM3Q8TF72 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.18■■□□□ 1.62
SHROOM3Q8TF72 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SHROOM3Q8TF72 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SHROOM3Q8TF72 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SHROOM3Q8TF72 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SHROOM3Q8TF72 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.17■■□□□ 1.62
SHROOM3Q8TF72 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SHROOM3Q8TF72 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SHROOM3Q8TF72 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SHROOM3Q8TF72 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
SHROOM3Q8TF72 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC25.16■■□□□ 1.62
SHROOM3Q8TF72 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SHROOM3Q8TF72 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC25.16■■□□□ 1.62
SHROOM3Q8TF72 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SHROOM3Q8TF72 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SHROOM3Q8TF72 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC25.16■■□□□ 1.62
SHROOM3Q8TF72 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC25.15■■□□□ 1.62
SHROOM3Q8TF72 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
SHROOM3Q8TF72 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
SHROOM3Q8TF72 RARRES2P2-201ENST00000394842 485 ntBASIC25.14■■□□□ 1.62
SHROOM3Q8TF72 AL359504.2-201ENST00000605506 1601 ntBASIC25.14■■□□□ 1.62
SHROOM3Q8TF72 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.62
SHROOM3Q8TF72 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
SHROOM3Q8TF72 AL359258.2-201ENST00000564063 1566 ntBASIC25.14■■□□□ 1.62
SHROOM3Q8TF72 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
SHROOM3Q8TF72 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SHROOM3Q8TF72 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC25.13■■□□□ 1.61
SHROOM3Q8TF72 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SHROOM3Q8TF72 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC25.13■■□□□ 1.61
SHROOM3Q8TF72 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHROOM3Q8TF72 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHROOM3Q8TF72 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SHROOM3Q8TF72 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHROOM3Q8TF72 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.11■■□□□ 1.61
SHROOM3Q8TF72 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC25.11■■□□□ 1.61
SHROOM3Q8TF72 AC025884.2-201ENST00000553429 711 ntBASIC25.11■■□□□ 1.61
SHROOM3Q8TF72 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHROOM3Q8TF72 CEP120-209ENST00000515110 606 ntTSL 3 BASIC25.11■■□□□ 1.61
SHROOM3Q8TF72 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SHROOM3Q8TF72 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SHROOM3Q8TF72 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC25.1■■□□□ 1.61
SHROOM3Q8TF72 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
SHROOM3Q8TF72 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
SHROOM3Q8TF72 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC25.09■■□□□ 1.61
SHROOM3Q8TF72 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
SHROOM3Q8TF72 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SHROOM3Q8TF72 GPX1-201ENST00000419349 1106 ntBASIC25.08■■□□□ 1.61
SHROOM3Q8TF72 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
SHROOM3Q8TF72 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SHROOM3Q8TF72 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SHROOM3Q8TF72 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
SHROOM3Q8TF72 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
SHROOM3Q8TF72 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
SHROOM3Q8TF72 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
SHROOM3Q8TF72 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
SHROOM3Q8TF72 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
SHROOM3Q8TF72 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SHROOM3Q8TF72 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC25.06■■□□□ 1.6
SHROOM3Q8TF72 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.06■■□□□ 1.6
SHROOM3Q8TF72 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
SHROOM3Q8TF72 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
SHROOM3Q8TF72 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
SHROOM3Q8TF72 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC25.06■■□□□ 1.6
SHROOM3Q8TF72 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.06■■□□□ 1.6
SHROOM3Q8TF72 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
SHROOM3Q8TF72 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.06■■□□□ 1.6
SHROOM3Q8TF72 AC126177.7-201ENST00000547904 679 ntBASIC25.05■■□□□ 1.6
SHROOM3Q8TF72 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC25.05■■□□□ 1.6
SHROOM3Q8TF72 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
SHROOM3Q8TF72 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SHROOM3Q8TF72 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SHROOM3Q8TF72 AC022413.1-201ENST00000624602 984 ntBASIC25.05■■□□□ 1.6
SHROOM3Q8TF72 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SHROOM3Q8TF72 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.05■■□□□ 1.6
SHROOM3Q8TF72 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SHROOM3Q8TF72 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC25.04■■□□□ 1.6
SHROOM3Q8TF72 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC25.04■■□□□ 1.6
SHROOM3Q8TF72 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SHROOM3Q8TF72 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
SHROOM3Q8TF72 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC25.04■■□□□ 1.6
SHROOM3Q8TF72 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
SHROOM3Q8TF72 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.04■■□□□ 1.6
SHROOM3Q8TF72 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC25.04■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms