Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
Usp47Q8BY87 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
Usp47Q8BY87 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
Usp47Q8BY87 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC32.05■■■□□ 2.72
Usp47Q8BY87 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Usp47Q8BY87 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
Usp47Q8BY87 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC32.03■■■□□ 2.72
Usp47Q8BY87 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC32.03■■■□□ 2.72
Usp47Q8BY87 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC32.02■■■□□ 2.72
Usp47Q8BY87 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Usp47Q8BY87 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
Usp47Q8BY87 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC32.01■■■□□ 2.71
Usp47Q8BY87 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC32■■■□□ 2.71
Usp47Q8BY87 Gm5067-201ENSMUST00000170449 1009 ntBASIC32■■■□□ 2.71
Usp47Q8BY87 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Usp47Q8BY87 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Usp47Q8BY87 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Usp47Q8BY87 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Usp47Q8BY87 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Usp47Q8BY87 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
Usp47Q8BY87 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC31.98■■■□□ 2.71
Usp47Q8BY87 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
Usp47Q8BY87 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Usp47Q8BY87 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC31.98■■■□□ 2.71
Usp47Q8BY87 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Usp47Q8BY87 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Usp47Q8BY87 AC117769.4-201ENSMUST00000225679 685 ntBASIC31.97■■■□□ 2.71
Usp47Q8BY87 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Usp47Q8BY87 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
Usp47Q8BY87 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Usp47Q8BY87 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC31.97■■■□□ 2.71
Usp47Q8BY87 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC31.96■■■□□ 2.71
Usp47Q8BY87 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
Usp47Q8BY87 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Usp47Q8BY87 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.7
Usp47Q8BY87 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC31.94■■■□□ 2.7
Usp47Q8BY87 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC31.94■■■□□ 2.7
Usp47Q8BY87 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
Usp47Q8BY87 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Usp47Q8BY87 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC31.94■■■□□ 2.7
Usp47Q8BY87 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC31.94■■■□□ 2.7
Usp47Q8BY87 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Usp47Q8BY87 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC31.93■■■□□ 2.7
Usp47Q8BY87 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.93■■■□□ 2.7
Usp47Q8BY87 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.7
Usp47Q8BY87 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Usp47Q8BY87 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC31.93■■■□□ 2.7
Usp47Q8BY87 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
Usp47Q8BY87 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
Usp47Q8BY87 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC31.92■■■□□ 2.7
Usp47Q8BY87 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Usp47Q8BY87 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
Usp47Q8BY87 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC31.91■■■□□ 2.7
Usp47Q8BY87 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC31.91■■■□□ 2.7
Usp47Q8BY87 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
Usp47Q8BY87 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC31.9■■■□□ 2.7
Usp47Q8BY87 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
Usp47Q8BY87 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC31.89■■■□□ 2.7
Usp47Q8BY87 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Usp47Q8BY87 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Usp47Q8BY87 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC31.86■■■□□ 2.69
Usp47Q8BY87 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
Usp47Q8BY87 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC31.86■■■□□ 2.69
Usp47Q8BY87 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC31.86■■■□□ 2.69
Usp47Q8BY87 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Usp47Q8BY87 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
Usp47Q8BY87 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
Usp47Q8BY87 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC31.86■■■□□ 2.69
Usp47Q8BY87 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Usp47Q8BY87 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC31.86■■■□□ 2.69
Usp47Q8BY87 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Usp47Q8BY87 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Usp47Q8BY87 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Usp47Q8BY87 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
Usp47Q8BY87 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC31.84■■■□□ 2.69
Usp47Q8BY87 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Usp47Q8BY87 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Usp47Q8BY87 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Usp47Q8BY87 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
Usp47Q8BY87 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Usp47Q8BY87 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
Usp47Q8BY87 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC31.82■■■□□ 2.69
Usp47Q8BY87 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
Usp47Q8BY87 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC31.81■■■□□ 2.68
Usp47Q8BY87 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC31.81■■■□□ 2.68
Usp47Q8BY87 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC31.81■■■□□ 2.68
Usp47Q8BY87 Gm43592-201ENSMUST00000196922 1165 ntBASIC31.81■■■□□ 2.68
Usp47Q8BY87 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
Usp47Q8BY87 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Usp47Q8BY87 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Usp47Q8BY87 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Usp47Q8BY87 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Usp47Q8BY87 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Usp47Q8BY87 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC31.78■■■□□ 2.68
Usp47Q8BY87 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC31.78■■■□□ 2.68
Usp47Q8BY87 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC31.77■■■□□ 2.68
Usp47Q8BY87 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC31.76■■■□□ 2.68
Usp47Q8BY87 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Usp47Q8BY87 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
Usp47Q8BY87 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC31.75■■■□□ 2.67
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms