Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
RETREG3Q86VR2 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
RETREG3Q86VR2 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
RETREG3Q86VR2 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RETREG3Q86VR2 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
RETREG3Q86VR2 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.35■■□□□ 1.33
RETREG3Q86VR2 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
RETREG3Q86VR2 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RETREG3Q86VR2 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
RETREG3Q86VR2 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
RETREG3Q86VR2 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
RETREG3Q86VR2 AC087741.3-201ENST00000624270 1347 ntBASIC23.33■■□□□ 1.32
RETREG3Q86VR2 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RETREG3Q86VR2 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RETREG3Q86VR2 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
RETREG3Q86VR2 NRG1-221ENST00000614767 762 ntTSL 5 BASIC23.31■■□□□ 1.32
RETREG3Q86VR2 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23.31■■□□□ 1.32
RETREG3Q86VR2 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
RETREG3Q86VR2 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
RETREG3Q86VR2 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
RETREG3Q86VR2 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
RETREG3Q86VR2 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.29■■□□□ 1.32
RETREG3Q86VR2 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
RETREG3Q86VR2 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
RETREG3Q86VR2 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
RETREG3Q86VR2 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.29■■□□□ 1.32
RETREG3Q86VR2 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
RETREG3Q86VR2 AP006261.1-201ENST00000584783 668 ntBASIC23.28■■□□□ 1.32
RETREG3Q86VR2 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC23.28■■□□□ 1.32
RETREG3Q86VR2 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RETREG3Q86VR2 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.26■■□□□ 1.31
RETREG3Q86VR2 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RETREG3Q86VR2 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
RETREG3Q86VR2 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RETREG3Q86VR2 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RETREG3Q86VR2 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.25■■□□□ 1.31
RETREG3Q86VR2 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RETREG3Q86VR2 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
RETREG3Q86VR2 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
RETREG3Q86VR2 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RETREG3Q86VR2 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RETREG3Q86VR2 AC142381.3-201ENST00000568208 1670 ntBASIC23.25■■□□□ 1.31
RETREG3Q86VR2 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
RETREG3Q86VR2 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
RETREG3Q86VR2 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.24■■□□□ 1.31
RETREG3Q86VR2 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RETREG3Q86VR2 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
RETREG3Q86VR2 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RETREG3Q86VR2 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
RETREG3Q86VR2 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
RETREG3Q86VR2 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RETREG3Q86VR2 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RETREG3Q86VR2 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RETREG3Q86VR2 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.21■■□□□ 1.31
RETREG3Q86VR2 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.21■■□□□ 1.31
RETREG3Q86VR2 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
RETREG3Q86VR2 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
RETREG3Q86VR2 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RETREG3Q86VR2 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 AC022211.4-201ENST00000625094 2161 ntBASIC23.2■■□□□ 1.3
RETREG3Q86VR2 AC138932.3-201ENST00000567634 1902 ntBASIC23.2■■□□□ 1.3
RETREG3Q86VR2 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
RETREG3Q86VR2 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
RETREG3Q86VR2 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.19■■□□□ 1.3
RETREG3Q86VR2 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG3Q86VR2 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.19■■□□□ 1.3
RETREG3Q86VR2 AC021231.2-201ENST00000594613 730 ntBASIC23.19■■□□□ 1.3
RETREG3Q86VR2 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
RETREG3Q86VR2 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG3Q86VR2 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 PREB-202ENST00000406567 1910 ntTSL 5 BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RETREG3Q86VR2 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms