Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HSPG2P98160 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC15.69■□□□□ 0.1
HSPG2P98160 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC15.69■□□□□ 0.1
HSPG2P98160 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
HSPG2P98160 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HSPG2P98160 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC15.68■□□□□ 0.1
HSPG2P98160 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC15.68■□□□□ 0.1
HSPG2P98160 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HSPG2P98160 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
HSPG2P98160 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HSPG2P98160 AC026271.2-201ENST00000428091 497 ntBASIC15.68■□□□□ 0.1
HSPG2P98160 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC15.68■□□□□ 0.1
HSPG2P98160 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
HSPG2P98160 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HSPG2P98160 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HSPG2P98160 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC15.68■□□□□ 0.1
HSPG2P98160 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
HSPG2P98160 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HSPG2P98160 MIR3960-201ENST00000583311 91 ntBASIC15.67■□□□□ 0.1
HSPG2P98160 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC15.66■□□□□ 0.1
HSPG2P98160 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC15.66■□□□□ 0.1
HSPG2P98160 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HSPG2P98160 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HSPG2P98160 AC087393.1-201ENST00000582896 145 ntBASIC15.66■□□□□ 0.1
HSPG2P98160 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HSPG2P98160 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HSPG2P98160 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HSPG2P98160 AL136116.3-201ENST00000402907 1138 ntBASIC15.65■□□□□ 0.1
HSPG2P98160 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HSPG2P98160 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HSPG2P98160 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HSPG2P98160 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
HSPG2P98160 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
HSPG2P98160 AC019171.1-201ENST00000601251 1056 ntBASIC15.65■□□□□ 0.1
HSPG2P98160 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HSPG2P98160 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
HSPG2P98160 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC15.65■□□□□ 0.1
HSPG2P98160 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HSPG2P98160 MTX2-204ENST00000443241 799 ntTSL 3 BASIC15.65■□□□□ 0.1
HSPG2P98160 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
HSPG2P98160 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HSPG2P98160 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HSPG2P98160 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC15.64■□□□□ 0.09
HSPG2P98160 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HSPG2P98160 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
HSPG2P98160 AC096631.2-201ENST00000436136 790 ntBASIC15.64■□□□□ 0.09
HSPG2P98160 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HSPG2P98160 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
HSPG2P98160 KRT125P-201ENST00000546827 989 ntBASIC15.64■□□□□ 0.09
HSPG2P98160 GUK1-205ENST00000366722 850 ntTSL 3 BASIC15.64■□□□□ 0.09
HSPG2P98160 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC15.64■□□□□ 0.09
HSPG2P98160 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HSPG2P98160 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
HSPG2P98160 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC15.63■□□□□ 0.09
HSPG2P98160 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC15.63■□□□□ 0.09
HSPG2P98160 LONRF2P2-201ENST00000439212 571 ntBASIC15.63■□□□□ 0.09
HSPG2P98160 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
HSPG2P98160 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
HSPG2P98160 AL135925.1-201ENST00000605920 1701 ntBASIC15.63■□□□□ 0.09
HSPG2P98160 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
HSPG2P98160 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
HSPG2P98160 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HSPG2P98160 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HSPG2P98160 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
HSPG2P98160 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC15.62■□□□□ 0.09
HSPG2P98160 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
HSPG2P98160 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HSPG2P98160 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
HSPG2P98160 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HSPG2P98160 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
HSPG2P98160 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HSPG2P98160 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC15.61■□□□□ 0.09
HSPG2P98160 AC104564.3-201ENST00000582367 638 ntBASIC15.61■□□□□ 0.09
HSPG2P98160 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC15.61■□□□□ 0.09
HSPG2P98160 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HSPG2P98160 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HSPG2P98160 AC135279.3-201ENST00000610945 1311 ntBASIC15.6■□□□□ 0.09
HSPG2P98160 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
HSPG2P98160 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HSPG2P98160 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
HSPG2P98160 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HSPG2P98160 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC15.59■□□□□ 0.09
HSPG2P98160 KRT16P3-201ENST00000439127 1283 ntBASIC15.59■□□□□ 0.09
HSPG2P98160 MIR5787-201ENST00000611784 55 ntBASIC15.59■□□□□ 0.09
HSPG2P98160 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
HSPG2P98160 AC133561.4-201ENST00000566112 224 ntBASIC15.59■□□□□ 0.09
HSPG2P98160 AL117332.1-201ENST00000622628 974 ntBASIC15.59■□□□□ 0.09
HSPG2P98160 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC15.59■□□□□ 0.09
HSPG2P98160 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
HSPG2P98160 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
HSPG2P98160 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HSPG2P98160 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC15.58■□□□□ 0.08
HSPG2P98160 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HSPG2P98160 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HSPG2P98160 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC15.58■□□□□ 0.08
HSPG2P98160 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC15.58■□□□□ 0.08
HSPG2P98160 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HSPG2P98160 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC15.58■□□□□ 0.08
HSPG2P98160 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
HSPG2P98160 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms