Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PRKDCP78527 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PRKDCP78527 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
PRKDCP78527 KRT125P-201ENST00000546827 989 ntBASIC18.34■□□□□ 0.53
PRKDCP78527 AL136116.3-201ENST00000402907 1138 ntBASIC18.34■□□□□ 0.53
PRKDCP78527 PFN2-211ENST00000489155 636 ntTSL 4 BASIC18.34■□□□□ 0.53
PRKDCP78527 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.34■□□□□ 0.53
PRKDCP78527 AC135279.3-201ENST00000610945 1311 ntBASIC18.34■□□□□ 0.53
PRKDCP78527 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PRKDCP78527 MIR5787-201ENST00000611784 55 ntBASIC18.34■□□□□ 0.53
PRKDCP78527 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PRKDCP78527 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
PRKDCP78527 AC096631.2-201ENST00000436136 790 ntBASIC18.33■□□□□ 0.53
PRKDCP78527 LONRF2P2-201ENST00000439212 571 ntBASIC18.33■□□□□ 0.53
PRKDCP78527 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
PRKDCP78527 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PRKDCP78527 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PRKDCP78527 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PRKDCP78527 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PRKDCP78527 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PRKDCP78527 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC18.32■□□□□ 0.52
PRKDCP78527 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PRKDCP78527 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.31■□□□□ 0.52
PRKDCP78527 AC133561.4-201ENST00000566112 224 ntBASIC18.3■□□□□ 0.52
PRKDCP78527 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
PRKDCP78527 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PRKDCP78527 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC18.3■□□□□ 0.52
PRKDCP78527 KRT16P3-201ENST00000439127 1283 ntBASIC18.3■□□□□ 0.52
PRKDCP78527 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC18.3■□□□□ 0.52
PRKDCP78527 AC019171.1-201ENST00000601251 1056 ntBASIC18.3■□□□□ 0.52
PRKDCP78527 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PRKDCP78527 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
PRKDCP78527 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PRKDCP78527 MTX2-204ENST00000443241 799 ntTSL 3 BASIC18.3■□□□□ 0.52
PRKDCP78527 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC18.29■□□□□ 0.52
PRKDCP78527 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PRKDCP78527 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
PRKDCP78527 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC18.29■□□□□ 0.52
PRKDCP78527 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC18.29■□□□□ 0.52
PRKDCP78527 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC18.29■□□□□ 0.52
PRKDCP78527 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
PRKDCP78527 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PRKDCP78527 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC18.29■□□□□ 0.52
PRKDCP78527 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PRKDCP78527 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
PRKDCP78527 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PRKDCP78527 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PRKDCP78527 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC18.28■□□□□ 0.52
PRKDCP78527 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PRKDCP78527 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PRKDCP78527 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC18.27■□□□□ 0.52
PRKDCP78527 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PRKDCP78527 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
PRKDCP78527 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PRKDCP78527 AC087393.1-201ENST00000582896 145 ntBASIC18.26■□□□□ 0.51
PRKDCP78527 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PRKDCP78527 MEST-211ENST00000437945 1455 ntTSL 5 BASIC18.26■□□□□ 0.51
PRKDCP78527 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PRKDCP78527 MIR4466-201ENST00000606121 54 ntBASIC18.25■□□□□ 0.51
PRKDCP78527 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PRKDCP78527 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PRKDCP78527 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
PRKDCP78527 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PRKDCP78527 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PRKDCP78527 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PRKDCP78527 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PRKDCP78527 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PRKDCP78527 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PRKDCP78527 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC18.24■□□□□ 0.51
PRKDCP78527 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PRKDCP78527 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
PRKDCP78527 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PRKDCP78527 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PRKDCP78527 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
PRKDCP78527 MIR3960-201ENST00000583311 91 ntBASIC18.24■□□□□ 0.51
PRKDCP78527 AL117332.1-201ENST00000622628 974 ntBASIC18.24■□□□□ 0.51
PRKDCP78527 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PRKDCP78527 TRIR-202ENST00000588213 841 ntTSL 3 BASIC18.24■□□□□ 0.51
PRKDCP78527 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PRKDCP78527 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PRKDCP78527 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PRKDCP78527 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC18.23■□□□□ 0.51
PRKDCP78527 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC18.23■□□□□ 0.51
PRKDCP78527 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.23■□□□□ 0.51
PRKDCP78527 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PRKDCP78527 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC18.23■□□□□ 0.51
PRKDCP78527 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PRKDCP78527 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC18.22■□□□□ 0.51
PRKDCP78527 AL031432.3-201ENST00000607698 485 ntBASIC18.22■□□□□ 0.51
PRKDCP78527 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PRKDCP78527 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.22■□□□□ 0.51
PRKDCP78527 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PRKDCP78527 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PRKDCP78527 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC18.22■□□□□ 0.51
PRKDCP78527 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PRKDCP78527 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
PRKDCP78527 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PRKDCP78527 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC18.21■□□□□ 0.51
PRKDCP78527 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PRKDCP78527 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms