Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ABCA4P78363 AC103724.3-201ENST00000564481 992 ntBASIC21.29■■□□□ 1
ABCA4P78363 BHLHE23-202ENST00000612929 1109 ntBASIC21.29■■□□□ 1
ABCA4P78363 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC21.28■■□□□ 1
ABCA4P78363 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC21.28■■□□□ 1
ABCA4P78363 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.28■■□□□ 1
ABCA4P78363 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ABCA4P78363 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.28■■□□□ 1
ABCA4P78363 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ABCA4P78363 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ABCA4P78363 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ABCA4P78363 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.27■■□□□ 1
ABCA4P78363 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ABCA4P78363 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
ABCA4P78363 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.27■■□□□ 1
ABCA4P78363 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.27■■□□□ 1
ABCA4P78363 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.27■■□□□ 1
ABCA4P78363 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.27■■□□□ 1
ABCA4P78363 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
ABCA4P78363 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ABCA4P78363 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
ABCA4P78363 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ABCA4P78363 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ABCA4P78363 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.26■□□□□ 0.99
ABCA4P78363 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ABCA4P78363 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
ABCA4P78363 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA4P78363 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA4P78363 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
ABCA4P78363 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA4P78363 AC103834.1-201ENST00000520383 144 ntBASIC21.25■□□□□ 0.99
ABCA4P78363 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.25■□□□□ 0.99
ABCA4P78363 WHAMMP3-201ENST00000611636 1609 ntBASIC21.25■□□□□ 0.99
ABCA4P78363 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA4P78363 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ABCA4P78363 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
ABCA4P78363 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
ABCA4P78363 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ABCA4P78363 MIR3960-201ENST00000583311 91 ntBASIC21.24■□□□□ 0.99
ABCA4P78363 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
ABCA4P78363 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
ABCA4P78363 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.24■□□□□ 0.99
ABCA4P78363 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
ABCA4P78363 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
ABCA4P78363 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
ABCA4P78363 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
ABCA4P78363 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.22■□□□□ 0.99
ABCA4P78363 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
ABCA4P78363 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ABCA4P78363 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
ABCA4P78363 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.21■□□□□ 0.99
ABCA4P78363 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ABCA4P78363 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ABCA4P78363 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
ABCA4P78363 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.21■□□□□ 0.99
ABCA4P78363 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
ABCA4P78363 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
ABCA4P78363 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
ABCA4P78363 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
ABCA4P78363 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ABCA4P78363 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.21■□□□□ 0.99
ABCA4P78363 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ABCA4P78363 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
ABCA4P78363 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.2■□□□□ 0.98
ABCA4P78363 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ABCA4P78363 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
ABCA4P78363 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
ABCA4P78363 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
ABCA4P78363 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
ABCA4P78363 YBX1P4-201ENST00000392794 808 ntBASIC21.2■□□□□ 0.98
ABCA4P78363 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.2■□□□□ 0.98
ABCA4P78363 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.2■□□□□ 0.98
ABCA4P78363 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA4P78363 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.19■□□□□ 0.98
ABCA4P78363 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
ABCA4P78363 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA4P78363 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
ABCA4P78363 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.18■□□□□ 0.98
ABCA4P78363 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.18■□□□□ 0.98
ABCA4P78363 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA4P78363 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.18■□□□□ 0.98
ABCA4P78363 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA4P78363 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA4P78363 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
ABCA4P78363 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.18■□□□□ 0.98
ABCA4P78363 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.17■□□□□ 0.98
ABCA4P78363 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ABCA4P78363 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ABCA4P78363 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ABCA4P78363 AL356441.2-201ENST00000443009 864 ntBASIC21.17■□□□□ 0.98
ABCA4P78363 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.17■□□□□ 0.98
ABCA4P78363 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.17■□□□□ 0.98
ABCA4P78363 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ABCA4P78363 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
ABCA4P78363 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.16■□□□□ 0.98
ABCA4P78363 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC21.16■□□□□ 0.98
ABCA4P78363 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ABCA4P78363 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ABCA4P78363 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
ABCA4P78363 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms