Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC21.57■■□□□ 1.04
Cdx2P43241 Gm18755-201ENSMUST00000218030 1099 ntBASIC21.57■■□□□ 1.04
Cdx2P43241 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC21.56■■□□□ 1.04
Cdx2P43241 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Cdx2P43241 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cdx2P43241 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
Cdx2P43241 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cdx2P43241 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cdx2P43241 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
Cdx2P43241 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cdx2P43241 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cdx2P43241 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Cdx2P43241 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cdx2P43241 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cdx2P43241 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cdx2P43241 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Cdx2P43241 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cdx2P43241 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cdx2P43241 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC21.53■■□□□ 1.04
Cdx2P43241 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Cdx2P43241 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Cdx2P43241 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cdx2P43241 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Cdx2P43241 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Cdx2P43241 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC21.52■■□□□ 1.04
Cdx2P43241 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cdx2P43241 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cdx2P43241 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cdx2P43241 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cdx2P43241 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
Cdx2P43241 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cdx2P43241 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cdx2P43241 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC21.51■■□□□ 1.03
Cdx2P43241 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Cdx2P43241 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC21.5■■□□□ 1.03
Cdx2P43241 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Cdx2P43241 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Cdx2P43241 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cdx2P43241 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cdx2P43241 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cdx2P43241 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cdx2P43241 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Cdx2P43241 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC21.48■■□□□ 1.03
Cdx2P43241 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Cdx2P43241 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Cdx2P43241 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Cdx2P43241 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Cdx2P43241 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cdx2P43241 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC21.47■■□□□ 1.03
Cdx2P43241 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cdx2P43241 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cdx2P43241 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cdx2P43241 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC21.46■■□□□ 1.03
Cdx2P43241 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Cdx2P43241 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Cdx2P43241 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Cdx2P43241 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Cdx2P43241 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Cdx2P43241 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cdx2P43241 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Cdx2P43241 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cdx2P43241 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC21.44■■□□□ 1.02
Cdx2P43241 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cdx2P43241 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cdx2P43241 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC21.44■■□□□ 1.02
Cdx2P43241 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Cdx2P43241 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Cdx2P43241 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC21.44■■□□□ 1.02
Cdx2P43241 AC164433.2-201ENSMUST00000226346 1701 ntBASIC21.43■■□□□ 1.02
Cdx2P43241 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cdx2P43241 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cdx2P43241 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC21.43■■□□□ 1.02
Cdx2P43241 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cdx2P43241 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Cdx2P43241 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.42■■□□□ 1.02
Cdx2P43241 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC21.42■■□□□ 1.02
Cdx2P43241 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC21.42■■□□□ 1.02
Cdx2P43241 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Cdx2P43241 Gm10232-201ENSMUST00000089221 720 ntBASIC21.42■■□□□ 1.02
Cdx2P43241 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Cdx2P43241 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cdx2P43241 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Cdx2P43241 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Cdx2P43241 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
Cdx2P43241 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Cdx2P43241 Etf1-202ENSMUST00000180351 108 ntBASIC21.39■■□□□ 1.01
Cdx2P43241 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
Cdx2P43241 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
Cdx2P43241 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cdx2P43241 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cdx2P43241 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cdx2P43241 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
Cdx2P43241 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cdx2P43241 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Cdx2P43241 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cdx2P43241 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Cdx2P43241 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cdx2P43241 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cdx2P43241 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cdx2P43241 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms