Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Cldn1O88551 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC19.06■□□□□ 0.64
Cldn1O88551 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Cldn1O88551 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.06■□□□□ 0.64
Cldn1O88551 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.06■□□□□ 0.64
Cldn1O88551 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cldn1O88551 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cldn1O88551 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.05■□□□□ 0.64
Cldn1O88551 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Cldn1O88551 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cldn1O88551 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
Cldn1O88551 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Cldn1O88551 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Cldn1O88551 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Cldn1O88551 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cldn1O88551 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cldn1O88551 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC19.03■□□□□ 0.64
Cldn1O88551 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC19.03■□□□□ 0.64
Cldn1O88551 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Cldn1O88551 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Cldn1O88551 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cldn1O88551 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cldn1O88551 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Cldn1O88551 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cldn1O88551 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cldn1O88551 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cldn1O88551 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cldn1O88551 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Cldn1O88551 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Cldn1O88551 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cldn1O88551 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cldn1O88551 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Cldn1O88551 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cldn1O88551 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Cldn1O88551 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Cldn1O88551 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19■□□□□ 0.63
Cldn1O88551 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
Cldn1O88551 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Cldn1O88551 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Cldn1O88551 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Cldn1O88551 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC19■□□□□ 0.63
Cldn1O88551 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Cldn1O88551 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC18.99■□□□□ 0.63
Cldn1O88551 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC18.99■□□□□ 0.63
Cldn1O88551 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC18.99■□□□□ 0.63
Cldn1O88551 Gm18755-201ENSMUST00000218030 1099 ntBASIC18.99■□□□□ 0.63
Cldn1O88551 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cldn1O88551 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cldn1O88551 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cldn1O88551 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cldn1O88551 Gm37847-201ENSMUST00000192163 1497 ntBASIC18.98■□□□□ 0.63
Cldn1O88551 Gm31748-201ENSMUST00000194938 1497 ntBASIC18.98■□□□□ 0.63
Cldn1O88551 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
Cldn1O88551 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cldn1O88551 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cldn1O88551 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC18.97■□□□□ 0.63
Cldn1O88551 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cldn1O88551 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Cldn1O88551 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cldn1O88551 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cldn1O88551 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cldn1O88551 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC18.96■□□□□ 0.63
Cldn1O88551 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cldn1O88551 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cldn1O88551 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Cldn1O88551 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cldn1O88551 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cldn1O88551 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC18.94■□□□□ 0.62
Cldn1O88551 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cldn1O88551 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cldn1O88551 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cldn1O88551 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cldn1O88551 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cldn1O88551 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Cldn1O88551 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cldn1O88551 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Cldn1O88551 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cldn1O88551 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Cldn1O88551 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cldn1O88551 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cldn1O88551 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC18.93■□□□□ 0.62
Cldn1O88551 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cldn1O88551 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cldn1O88551 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cldn1O88551 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cldn1O88551 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cldn1O88551 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cldn1O88551 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cldn1O88551 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cldn1O88551 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
Cldn1O88551 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC18.9■□□□□ 0.62
Cldn1O88551 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Cldn1O88551 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cldn1O88551 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cldn1O88551 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cldn1O88551 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cldn1O88551 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cldn1O88551 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC18.89■□□□□ 0.61
Cldn1O88551 AC117769.4-201ENSMUST00000225679 685 ntBASIC18.89■□□□□ 0.61
Cldn1O88551 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 59.9 ms