Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 KRT16P3-201ENST00000439127 1283 ntBASIC11.28□□□□□ -0.6
USH2AO75445 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
USH2AO75445 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
USH2AO75445 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
USH2AO75445 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
USH2AO75445 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC11.28□□□□□ -0.6
USH2AO75445 PFN2-211ENST00000489155 636 ntTSL 4 BASIC11.28□□□□□ -0.6
USH2AO75445 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
USH2AO75445 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
USH2AO75445 LONRF2P2-201ENST00000439212 571 ntBASIC11.27□□□□□ -0.6
USH2AO75445 AL162430.1-201ENST00000480705 870 ntBASIC11.27□□□□□ -0.6
USH2AO75445 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
USH2AO75445 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC11.27□□□□□ -0.6
USH2AO75445 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
USH2AO75445 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
USH2AO75445 SRR-208ENST00000576848 588 ntTSL 4 BASIC11.27□□□□□ -0.61
USH2AO75445 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC11.27□□□□□ -0.61
USH2AO75445 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
USH2AO75445 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
USH2AO75445 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.61
USH2AO75445 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
USH2AO75445 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC11.27□□□□□ -0.61
USH2AO75445 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
USH2AO75445 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
USH2AO75445 AC090192.1-201ENST00000517740 490 ntBASIC11.26□□□□□ -0.61
USH2AO75445 AL031432.3-201ENST00000607698 485 ntBASIC11.26□□□□□ -0.61
USH2AO75445 AL117332.1-201ENST00000622628 974 ntBASIC11.26□□□□□ -0.61
USH2AO75445 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC11.26□□□□□ -0.61
USH2AO75445 IDNK-203ENST00000405990 629 ntTSL 2 BASIC11.26□□□□□ -0.61
USH2AO75445 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC11.26□□□□□ -0.61
USH2AO75445 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
USH2AO75445 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC11.26□□□□□ -0.61
USH2AO75445 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC11.25□□□□□ -0.61
USH2AO75445 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
USH2AO75445 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
USH2AO75445 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
USH2AO75445 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
USH2AO75445 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
USH2AO75445 DENND3-207ENST00000518347 850 ntTSL 2 BASIC11.25□□□□□ -0.61
USH2AO75445 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC11.25□□□□□ -0.61
USH2AO75445 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC11.25□□□□□ -0.61
USH2AO75445 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC11.24□□□□□ -0.61
USH2AO75445 ANKRD20A6P-201ENST00000618763 204 ntBASIC11.24□□□□□ -0.61
USH2AO75445 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
USH2AO75445 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
USH2AO75445 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
USH2AO75445 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC11.24□□□□□ -0.61
USH2AO75445 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC11.24□□□□□ -0.61
USH2AO75445 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC11.24□□□□□ -0.61
USH2AO75445 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
USH2AO75445 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
USH2AO75445 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
USH2AO75445 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC11.23□□□□□ -0.61
USH2AO75445 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC11.23□□□□□ -0.61
USH2AO75445 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
USH2AO75445 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
USH2AO75445 MTX2-204ENST00000443241 799 ntTSL 3 BASIC11.23□□□□□ -0.61
USH2AO75445 AC019171.1-201ENST00000601251 1056 ntBASIC11.23□□□□□ -0.61
USH2AO75445 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC11.23□□□□□ -0.61
USH2AO75445 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
USH2AO75445 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
USH2AO75445 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC11.23□□□□□ -0.61
USH2AO75445 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC11.23□□□□□ -0.61
USH2AO75445 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
USH2AO75445 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC11.23□□□□□ -0.61
USH2AO75445 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC11.22□□□□□ -0.61
USH2AO75445 TK2-202ENST00000417693 1046 ntTSL 2 BASIC11.22□□□□□ -0.61
USH2AO75445 LGR4-203ENST00000480977 492 ntTSL 2 BASIC11.22□□□□□ -0.61
USH2AO75445 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC11.22□□□□□ -0.61
USH2AO75445 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
USH2AO75445 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC11.22□□□□□ -0.61
USH2AO75445 MIR3960-201ENST00000583311 91 ntBASIC11.22□□□□□ -0.61
USH2AO75445 AC021242.3-201ENST00000607598 1377 ntBASIC11.22□□□□□ -0.61
USH2AO75445 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
USH2AO75445 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
USH2AO75445 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
USH2AO75445 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
USH2AO75445 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
USH2AO75445 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC11.22□□□□□ -0.61
USH2AO75445 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
USH2AO75445 AC087623.3-201ENST00000607047 1098 ntBASIC11.22□□□□□ -0.61
USH2AO75445 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
USH2AO75445 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
USH2AO75445 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC11.21□□□□□ -0.61
USH2AO75445 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
USH2AO75445 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
USH2AO75445 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
USH2AO75445 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
USH2AO75445 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
USH2AO75445 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
USH2AO75445 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
USH2AO75445 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC11.21□□□□□ -0.62
USH2AO75445 SUDS3P1-201ENST00000505831 966 ntBASIC11.21□□□□□ -0.62
USH2AO75445 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
USH2AO75445 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC11.21□□□□□ -0.62
USH2AO75445 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC11.21□□□□□ -0.62
USH2AO75445 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC11.2□□□□□ -0.62
USH2AO75445 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC11.2□□□□□ -0.62
USH2AO75445 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
USH2AO75445 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC11.2□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms