Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
HOXA3O43365 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.76■□□□□ 0.75
HOXA3O43365 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA3O43365 WHAMMP3-201ENST00000611636 1609 ntBASIC19.76■□□□□ 0.75
HOXA3O43365 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA3O43365 AC139795.1-202ENST00000500444 432 ntBASIC19.75■□□□□ 0.75
HOXA3O43365 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA3O43365 MIR6765-201ENST00000614092 87 ntBASIC19.75■□□□□ 0.75
HOXA3O43365 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
HOXA3O43365 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA3O43365 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA3O43365 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXA3O43365 AC010980.1-201ENST00000587192 1142 ntBASIC19.74■□□□□ 0.75
HOXA3O43365 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXA3O43365 AC018755.3-202ENST00000596210 929 ntBASIC19.74■□□□□ 0.75
HOXA3O43365 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
HOXA3O43365 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA3O43365 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA3O43365 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA3O43365 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA3O43365 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.73■□□□□ 0.75
HOXA3O43365 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.73■□□□□ 0.75
HOXA3O43365 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXA3O43365 PROC-203ENST00000409048 1586 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXA3O43365 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.72■□□□□ 0.75
HOXA3O43365 KRT8P33-201ENST00000508125 1423 ntBASIC19.71■□□□□ 0.75
HOXA3O43365 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA3O43365 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA3O43365 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA3O43365 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXA3O43365 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXA3O43365 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXA3O43365 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXA3O43365 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXA3O43365 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXA3O43365 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXA3O43365 AC074183.2-201ENST00000623112 922 ntBASIC19.7■□□□□ 0.74
HOXA3O43365 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXA3O43365 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXA3O43365 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
HOXA3O43365 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXA3O43365 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXA3O43365 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXA3O43365 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXA3O43365 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXA3O43365 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXA3O43365 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXA3O43365 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXA3O43365 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXA3O43365 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXA3O43365 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXA3O43365 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXA3O43365 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
HOXA3O43365 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.68■□□□□ 0.74
HOXA3O43365 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.68■□□□□ 0.74
HOXA3O43365 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXA3O43365 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXA3O43365 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXA3O43365 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
HOXA3O43365 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXA3O43365 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXA3O43365 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXA3O43365 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXA3O43365 AL451085.2-201ENST00000605085 799 ntBASIC19.67■□□□□ 0.74
HOXA3O43365 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC19.67■□□□□ 0.74
HOXA3O43365 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXA3O43365 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.66■□□□□ 0.74
HOXA3O43365 AL035685.1-201ENST00000636663 812 ntBASIC19.66■□□□□ 0.74
HOXA3O43365 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXA3O43365 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.66■□□□□ 0.74
HOXA3O43365 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXA3O43365 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXA3O43365 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXA3O43365 AC139426.1-201ENST00000568218 2529 ntBASIC19.65■□□□□ 0.74
HOXA3O43365 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
HOXA3O43365 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXA3O43365 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC19.65■□□□□ 0.74
HOXA3O43365 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXA3O43365 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXA3O43365 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXA3O43365 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXA3O43365 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXA3O43365 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXA3O43365 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXA3O43365 YBX1P4-201ENST00000392794 808 ntBASIC19.64■□□□□ 0.73
HOXA3O43365 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXA3O43365 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXA3O43365 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXA3O43365 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC19.64■□□□□ 0.73
HOXA3O43365 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
HOXA3O43365 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
HOXA3O43365 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HOXA3O43365 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
HOXA3O43365 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXA3O43365 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXA3O43365 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HOXA3O43365 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HOXA3O43365 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HOXA3O43365 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
HOXA3O43365 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms