Protein–RNA interactions for Protein: A6H584

Col6a5, Collagen alpha-5(VI) chain, mousemouse

Predictions only

Length 2,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a5A6H584 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col6a5A6H584 Gm8495-201ENSMUST00000188740 694 ntBASIC17.54■□□□□ 0.4
Col6a5A6H584 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col6a5A6H584 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col6a5A6H584 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col6a5A6H584 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC17.54■□□□□ 0.4
Col6a5A6H584 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col6a5A6H584 AC116713.1-201ENSMUST00000215074 430 ntBASIC17.53■□□□□ 0.4
Col6a5A6H584 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col6a5A6H584 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col6a5A6H584 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col6a5A6H584 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col6a5A6H584 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Col6a5A6H584 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC17.52■□□□□ 0.4
Col6a5A6H584 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col6a5A6H584 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col6a5A6H584 Gm12821-201ENSMUST00000120022 600 ntBASIC17.51■□□□□ 0.39
Col6a5A6H584 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Col6a5A6H584 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC17.51■□□□□ 0.39
Col6a5A6H584 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC17.51■□□□□ 0.39
Col6a5A6H584 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col6a5A6H584 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a5A6H584 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a5A6H584 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a5A6H584 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Col6a5A6H584 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col6a5A6H584 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Col6a5A6H584 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Col6a5A6H584 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
Col6a5A6H584 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC17.49■□□□□ 0.39
Col6a5A6H584 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Col6a5A6H584 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col6a5A6H584 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
Col6a5A6H584 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC17.49■□□□□ 0.39
Col6a5A6H584 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col6a5A6H584 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Col6a5A6H584 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col6a5A6H584 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC17.48■□□□□ 0.39
Col6a5A6H584 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC17.47■□□□□ 0.39
Col6a5A6H584 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Col6a5A6H584 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Col6a5A6H584 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC17.47■□□□□ 0.39
Col6a5A6H584 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col6a5A6H584 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col6a5A6H584 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col6a5A6H584 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col6a5A6H584 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
Col6a5A6H584 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col6a5A6H584 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col6a5A6H584 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Col6a5A6H584 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Col6a5A6H584 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.39
Col6a5A6H584 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Col6a5A6H584 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col6a5A6H584 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC17.45■□□□□ 0.38
Col6a5A6H584 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a5A6H584 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col6a5A6H584 Gm18284-201ENSMUST00000172604 624 ntBASIC17.45■□□□□ 0.38
Col6a5A6H584 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC17.45■□□□□ 0.38
Col6a5A6H584 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a5A6H584 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col6a5A6H584 Gm14121-201ENSMUST00000121441 1380 ntBASIC17.43■□□□□ 0.38
Col6a5A6H584 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a5A6H584 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC17.43■□□□□ 0.38
Col6a5A6H584 Gm22238-201ENSMUST00000175222 88 ntBASIC17.43■□□□□ 0.38
Col6a5A6H584 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col6a5A6H584 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a5A6H584 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a5A6H584 Gm45417-201ENSMUST00000209533 758 ntBASIC17.42■□□□□ 0.38
Col6a5A6H584 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
Col6a5A6H584 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a5A6H584 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col6a5A6H584 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC17.41■□□□□ 0.38
Col6a5A6H584 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC17.41■□□□□ 0.38
Col6a5A6H584 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col6a5A6H584 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Col6a5A6H584 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Col6a5A6H584 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col6a5A6H584 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col6a5A6H584 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col6a5A6H584 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC17.4■□□□□ 0.38
Col6a5A6H584 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col6a5A6H584 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col6a5A6H584 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC17.39■□□□□ 0.37
Col6a5A6H584 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
Col6a5A6H584 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col6a5A6H584 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC17.38■□□□□ 0.37
Col6a5A6H584 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col6a5A6H584 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Col6a5A6H584 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col6a5A6H584 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC17.38■□□□□ 0.37
Col6a5A6H584 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col6a5A6H584 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col6a5A6H584 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col6a5A6H584 Golgb1-201ENSMUST00000023534 498 ntBASIC17.37■□□□□ 0.37
Col6a5A6H584 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col6a5A6H584 Gm16464-201ENSMUST00000117815 1095 ntBASIC17.36■□□□□ 0.37
Col6a5A6H584 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col6a5A6H584 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col6a5A6H584 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms