Protein–RNA interactions for Protein: A0A0B4J1G9

Trbv5, T cell receptor beta, variable 5 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv5A0A0B4J1G9 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv5A0A0B4J1G9 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv5A0A0B4J1G9 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Trbv5A0A0B4J1G9 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv5A0A0B4J1G9 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv5A0A0B4J1G9 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv5A0A0B4J1G9 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC17.98■□□□□ 0.47
Trbv5A0A0B4J1G9 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trbv5A0A0B4J1G9 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trbv5A0A0B4J1G9 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
Trbv5A0A0B4J1G9 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trbv5A0A0B4J1G9 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trbv5A0A0B4J1G9 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trbv5A0A0B4J1G9 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trbv5A0A0B4J1G9 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trbv5A0A0B4J1G9 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv5A0A0B4J1G9 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC17.95■□□□□ 0.46
Trbv5A0A0B4J1G9 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Trbv5A0A0B4J1G9 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv5A0A0B4J1G9 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Trbv5A0A0B4J1G9 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC17.94■□□□□ 0.46
Trbv5A0A0B4J1G9 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trbv5A0A0B4J1G9 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Trbv5A0A0B4J1G9 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trbv5A0A0B4J1G9 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trbv5A0A0B4J1G9 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Trbv5A0A0B4J1G9 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC17.93■□□□□ 0.46
Trbv5A0A0B4J1G9 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Trbv5A0A0B4J1G9 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trbv5A0A0B4J1G9 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trbv5A0A0B4J1G9 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trbv5A0A0B4J1G9 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC17.92■□□□□ 0.46
Trbv5A0A0B4J1G9 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trbv5A0A0B4J1G9 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trbv5A0A0B4J1G9 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trbv5A0A0B4J1G9 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trbv5A0A0B4J1G9 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Trbv5A0A0B4J1G9 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv5A0A0B4J1G9 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Trbv5A0A0B4J1G9 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv5A0A0B4J1G9 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv5A0A0B4J1G9 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv5A0A0B4J1G9 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trbv5A0A0B4J1G9 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trbv5A0A0B4J1G9 Gm43863-201ENSMUST00000203822 1192 ntBASIC17.9■□□□□ 0.46
Trbv5A0A0B4J1G9 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trbv5A0A0B4J1G9 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trbv5A0A0B4J1G9 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC17.89■□□□□ 0.45
Trbv5A0A0B4J1G9 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
Trbv5A0A0B4J1G9 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trbv5A0A0B4J1G9 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Trbv5A0A0B4J1G9 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trbv5A0A0B4J1G9 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trbv5A0A0B4J1G9 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trbv5A0A0B4J1G9 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trbv5A0A0B4J1G9 Gm14121-201ENSMUST00000121441 1380 ntBASIC17.88■□□□□ 0.45
Trbv5A0A0B4J1G9 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trbv5A0A0B4J1G9 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trbv5A0A0B4J1G9 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trbv5A0A0B4J1G9 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Trbv5A0A0B4J1G9 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trbv5A0A0B4J1G9 AC157572.2-201ENSMUST00000226970 908 ntBASIC17.87■□□□□ 0.45
Trbv5A0A0B4J1G9 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Trbv5A0A0B4J1G9 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Trbv5A0A0B4J1G9 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trbv5A0A0B4J1G9 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv5A0A0B4J1G9 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv5A0A0B4J1G9 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv5A0A0B4J1G9 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv5A0A0B4J1G9 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Trbv5A0A0B4J1G9 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Trbv5A0A0B4J1G9 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Trbv5A0A0B4J1G9 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Trbv5A0A0B4J1G9 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trbv5A0A0B4J1G9 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
Trbv5A0A0B4J1G9 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trbv5A0A0B4J1G9 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv5A0A0B4J1G9 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv5A0A0B4J1G9 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv5A0A0B4J1G9 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv5A0A0B4J1G9 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv5A0A0B4J1G9 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv5A0A0B4J1G9 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trbv5A0A0B4J1G9 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC17.83■□□□□ 0.44
Trbv5A0A0B4J1G9 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trbv5A0A0B4J1G9 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trbv5A0A0B4J1G9 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC17.82■□□□□ 0.44
Trbv5A0A0B4J1G9 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trbv5A0A0B4J1G9 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trbv5A0A0B4J1G9 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trbv5A0A0B4J1G9 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trbv5A0A0B4J1G9 Gm4419-202ENSMUST00000226239 1431 ntBASIC17.81■□□□□ 0.44
Trbv5A0A0B4J1G9 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
Trbv5A0A0B4J1G9 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trbv5A0A0B4J1G9 Gm32051-202ENSMUST00000197905 2385 ntBASIC17.81■□□□□ 0.44
Trbv5A0A0B4J1G9 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trbv5A0A0B4J1G9 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trbv5A0A0B4J1G9 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trbv5A0A0B4J1G9 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC17.81■□□□□ 0.44
Trbv5A0A0B4J1G9 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 19.3 ms