Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Gm6934-201ENSMUST00000194780 1905 ntBASIC16.41■□□□□ 0.22
Trav16d-dv11A0A075B617 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Trav16d-dv11A0A075B617 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav16d-dv11A0A075B617 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trav16d-dv11A0A075B617 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Trav16d-dv11A0A075B617 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav16d-dv11A0A075B617 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav16d-dv11A0A075B617 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trav16d-dv11A0A075B617 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav16d-dv11A0A075B617 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav16d-dv11A0A075B617 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav16d-dv11A0A075B617 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trav16d-dv11A0A075B617 Dmtn-209ENSMUST00000228295 2572 ntBASIC16.39■□□□□ 0.21
Trav16d-dv11A0A075B617 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav16d-dv11A0A075B617 Gm38160-201ENSMUST00000193090 2499 ntBASIC16.39■□□□□ 0.21
Trav16d-dv11A0A075B617 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav16d-dv11A0A075B617 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav16d-dv11A0A075B617 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav16d-dv11A0A075B617 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Trav16d-dv11A0A075B617 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav16d-dv11A0A075B617 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav16d-dv11A0A075B617 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trav16d-dv11A0A075B617 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav16d-dv11A0A075B617 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav16d-dv11A0A075B617 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Trav16d-dv11A0A075B617 Notumos-201ENSMUST00000151998 2659 ntBASIC16.37■□□□□ 0.21
Trav16d-dv11A0A075B617 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav16d-dv11A0A075B617 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav16d-dv11A0A075B617 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trav16d-dv11A0A075B617 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav16d-dv11A0A075B617 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav16d-dv11A0A075B617 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trav16d-dv11A0A075B617 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav16d-dv11A0A075B617 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC16.35■□□□□ 0.21
Trav16d-dv11A0A075B617 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC16.35■□□□□ 0.21
Trav16d-dv11A0A075B617 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC16.35■□□□□ 0.21
Trav16d-dv11A0A075B617 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Trav16d-dv11A0A075B617 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav16d-dv11A0A075B617 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav16d-dv11A0A075B617 Gm30023-201ENSMUST00000197970 889 ntBASIC16.34■□□□□ 0.21
Trav16d-dv11A0A075B617 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav16d-dv11A0A075B617 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.21
Trav16d-dv11A0A075B617 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trav16d-dv11A0A075B617 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Trav16d-dv11A0A075B617 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Trav16d-dv11A0A075B617 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav16d-dv11A0A075B617 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC16.33■□□□□ 0.2
Trav16d-dv11A0A075B617 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav16d-dv11A0A075B617 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav16d-dv11A0A075B617 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trav16d-dv11A0A075B617 Gm24804-201ENSMUST00000174982 85 ntBASIC16.32■□□□□ 0.2
Trav16d-dv11A0A075B617 Gm43863-201ENSMUST00000203822 1192 ntBASIC16.32■□□□□ 0.2
Trav16d-dv11A0A075B617 AC157572.2-201ENSMUST00000226970 908 ntBASIC16.32■□□□□ 0.2
Trav16d-dv11A0A075B617 Gm26766-202ENSMUST00000227544 2347 ntBASIC16.32■□□□□ 0.2
Trav16d-dv11A0A075B617 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav16d-dv11A0A075B617 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav16d-dv11A0A075B617 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Trav16d-dv11A0A075B617 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav16d-dv11A0A075B617 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav16d-dv11A0A075B617 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav16d-dv11A0A075B617 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav16d-dv11A0A075B617 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Trav16d-dv11A0A075B617 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav16d-dv11A0A075B617 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav16d-dv11A0A075B617 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav16d-dv11A0A075B617 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav16d-dv11A0A075B617 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trav16d-dv11A0A075B617 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav16d-dv11A0A075B617 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC16.3■□□□□ 0.2
Trav16d-dv11A0A075B617 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trav16d-dv11A0A075B617 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav16d-dv11A0A075B617 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav16d-dv11A0A075B617 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav16d-dv11A0A075B617 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav16d-dv11A0A075B617 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav16d-dv11A0A075B617 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav16d-dv11A0A075B617 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav16d-dv11A0A075B617 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav16d-dv11A0A075B617 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav16d-dv11A0A075B617 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Trav16d-dv11A0A075B617 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav16d-dv11A0A075B617 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav16d-dv11A0A075B617 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC16.27■□□□□ 0.2
Trav16d-dv11A0A075B617 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav16d-dv11A0A075B617 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav16d-dv11A0A075B617 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav16d-dv11A0A075B617 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav16d-dv11A0A075B617 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav16d-dv11A0A075B617 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC16.26■□□□□ 0.19
Trav16d-dv11A0A075B617 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trav16d-dv11A0A075B617 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav16d-dv11A0A075B617 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav16d-dv11A0A075B617 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trav16d-dv11A0A075B617 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav16d-dv11A0A075B617 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
Trav16d-dv11A0A075B617 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav16d-dv11A0A075B617 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav16d-dv11A0A075B617 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav16d-dv11A0A075B617 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC16.25■□□□□ 0.19
Trav16d-dv11A0A075B617 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms