Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC24.15■■□□□ 1.46
PCDHB3Q9Y5E6 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHB3Q9Y5E6 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
PCDHB3Q9Y5E6 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHB3Q9Y5E6 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
PCDHB3Q9Y5E6 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.14■■□□□ 1.46
PCDHB3Q9Y5E6 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC24.14■■□□□ 1.46
PCDHB3Q9Y5E6 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC24.14■■□□□ 1.46
PCDHB3Q9Y5E6 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHB3Q9Y5E6 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC24.14■■□□□ 1.45
PCDHB3Q9Y5E6 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC24.14■■□□□ 1.45
PCDHB3Q9Y5E6 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.14■■□□□ 1.45
PCDHB3Q9Y5E6 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
PCDHB3Q9Y5E6 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
PCDHB3Q9Y5E6 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHB3Q9Y5E6 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHB3Q9Y5E6 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHB3Q9Y5E6 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC24.13■■□□□ 1.45
PCDHB3Q9Y5E6 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHB3Q9Y5E6 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHB3Q9Y5E6 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHB3Q9Y5E6 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHB3Q9Y5E6 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHB3Q9Y5E6 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHB3Q9Y5E6 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
PCDHB3Q9Y5E6 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
PCDHB3Q9Y5E6 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC24.11■■□□□ 1.45
PCDHB3Q9Y5E6 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
PCDHB3Q9Y5E6 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC24.11■■□□□ 1.45
PCDHB3Q9Y5E6 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC24.1■■□□□ 1.45
PCDHB3Q9Y5E6 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.1■■□□□ 1.45
PCDHB3Q9Y5E6 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHB3Q9Y5E6 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHB3Q9Y5E6 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHB3Q9Y5E6 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.09■■□□□ 1.45
PCDHB3Q9Y5E6 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC24.09■■□□□ 1.45
PCDHB3Q9Y5E6 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHB3Q9Y5E6 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHB3Q9Y5E6 MIR219A2-201ENST00000608502 1504 ntBASIC24.09■■□□□ 1.45
PCDHB3Q9Y5E6 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHB3Q9Y5E6 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC24.08■■□□□ 1.45
PCDHB3Q9Y5E6 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHB3Q9Y5E6 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC24.07■■□□□ 1.44
PCDHB3Q9Y5E6 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC24.07■■□□□ 1.44
PCDHB3Q9Y5E6 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHB3Q9Y5E6 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHB3Q9Y5E6 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
PCDHB3Q9Y5E6 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHB3Q9Y5E6 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC24.06■■□□□ 1.44
PCDHB3Q9Y5E6 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
PCDHB3Q9Y5E6 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHB3Q9Y5E6 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHB3Q9Y5E6 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHB3Q9Y5E6 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHB3Q9Y5E6 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
PCDHB3Q9Y5E6 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHB3Q9Y5E6 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHB3Q9Y5E6 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHB3Q9Y5E6 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC24.04■■□□□ 1.44
PCDHB3Q9Y5E6 AC100797.4-201ENST00000631653 1827 ntBASIC24.04■■□□□ 1.44
PCDHB3Q9Y5E6 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC24.04■■□□□ 1.44
PCDHB3Q9Y5E6 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC24.04■■□□□ 1.44
PCDHB3Q9Y5E6 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHB3Q9Y5E6 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHB3Q9Y5E6 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC24.03■■□□□ 1.44
PCDHB3Q9Y5E6 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHB3Q9Y5E6 NTF6A-201ENST00000591175 560 ntBASIC24.03■■□□□ 1.44
PCDHB3Q9Y5E6 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.03■■□□□ 1.44
PCDHB3Q9Y5E6 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC24.03■■□□□ 1.44
PCDHB3Q9Y5E6 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
PCDHB3Q9Y5E6 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHB3Q9Y5E6 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHB3Q9Y5E6 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC24.02■■□□□ 1.44
PCDHB3Q9Y5E6 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHB3Q9Y5E6 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC24.01■■□□□ 1.43
PCDHB3Q9Y5E6 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHB3Q9Y5E6 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHB3Q9Y5E6 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHB3Q9Y5E6 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHB3Q9Y5E6 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC24.01■■□□□ 1.43
PCDHB3Q9Y5E6 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
PCDHB3Q9Y5E6 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.01■■□□□ 1.43
PCDHB3Q9Y5E6 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PCDHB3Q9Y5E6 AC060814.1-201ENST00000554326 538 ntBASIC24■■□□□ 1.43
PCDHB3Q9Y5E6 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC24■■□□□ 1.43
PCDHB3Q9Y5E6 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24■■□□□ 1.43
PCDHB3Q9Y5E6 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PCDHB3Q9Y5E6 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.43
PCDHB3Q9Y5E6 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.99■■□□□ 1.43
PCDHB3Q9Y5E6 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHB3Q9Y5E6 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHB3Q9Y5E6 AC012354.3-201ENST00000623734 483 ntBASIC23.99■■□□□ 1.43
PCDHB3Q9Y5E6 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
PCDHB3Q9Y5E6 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHB3Q9Y5E6 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
PCDHB3Q9Y5E6 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.98■■□□□ 1.43
PCDHB3Q9Y5E6 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHB3Q9Y5E6 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHB3Q9Y5E6 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHB3Q9Y5E6 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.97■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms