Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA2Q9Y261 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA2Q9Y261 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
FOXA2Q9Y261 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
FOXA2Q9Y261 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXA2Q9Y261 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.95■□□□□ 0.78
FOXA2Q9Y261 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
FOXA2Q9Y261 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC19.95■□□□□ 0.78
FOXA2Q9Y261 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
FOXA2Q9Y261 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
FOXA2Q9Y261 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA2Q9Y261 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA2Q9Y261 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA2Q9Y261 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA2Q9Y261 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA2Q9Y261 PEX7-203ENST00000541292 945 ntTSL 5 BASIC19.93■□□□□ 0.78
FOXA2Q9Y261 CHST11-202ENST00000546689 756 ntTSL 2 BASIC19.93■□□□□ 0.78
FOXA2Q9Y261 MIR3648-2-201ENST00000581792 180 ntBASIC19.93■□□□□ 0.78
FOXA2Q9Y261 MIR3648-1-201ENST00000615959 180 ntBASIC19.93■□□□□ 0.78
FOXA2Q9Y261 CR559946.2-201ENST00000623684 991 ntBASIC19.93■□□□□ 0.78
FOXA2Q9Y261 GDI1-215ENST00000630693 786 ntTSL 4 BASIC19.93■□□□□ 0.78
FOXA2Q9Y261 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA2Q9Y261 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA2Q9Y261 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA2Q9Y261 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA2Q9Y261 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.92■□□□□ 0.78
FOXA2Q9Y261 AP004609.3-201ENST00000610705 1884 ntBASIC19.92■□□□□ 0.78
FOXA2Q9Y261 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC19.92■□□□□ 0.78
FOXA2Q9Y261 HES6-205ENST00000409356 528 ntTSL 2 BASIC19.92■□□□□ 0.78
FOXA2Q9Y261 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXA2Q9Y261 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
FOXA2Q9Y261 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXA2Q9Y261 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
FOXA2Q9Y261 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC19.92■□□□□ 0.78
FOXA2Q9Y261 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA2Q9Y261 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA2Q9Y261 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA2Q9Y261 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
FOXA2Q9Y261 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
FOXA2Q9Y261 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
FOXA2Q9Y261 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
FOXA2Q9Y261 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.89■□□□□ 0.77
FOXA2Q9Y261 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA2Q9Y261 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.88■□□□□ 0.77
FOXA2Q9Y261 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC19.88■□□□□ 0.77
FOXA2Q9Y261 AC016575.1-201ENST00000607026 382 ntBASIC19.88■□□□□ 0.77
FOXA2Q9Y261 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
FOXA2Q9Y261 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
FOXA2Q9Y261 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
FOXA2Q9Y261 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
FOXA2Q9Y261 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA2Q9Y261 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA2Q9Y261 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC19.86■□□□□ 0.77
FOXA2Q9Y261 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA2Q9Y261 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA2Q9Y261 AC092803.2-201ENST00000564287 1899 ntBASIC19.86■□□□□ 0.77
FOXA2Q9Y261 DUSP8P4-201ENST00000399538 1761 ntBASIC19.85■□□□□ 0.77
FOXA2Q9Y261 AC142472.1-201ENST00000612013 1741 ntBASIC19.85■□□□□ 0.77
FOXA2Q9Y261 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
FOXA2Q9Y261 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
FOXA2Q9Y261 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
FOXA2Q9Y261 WHAMMP3-201ENST00000611636 1609 ntBASIC19.84■□□□□ 0.77
FOXA2Q9Y261 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA2Q9Y261 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA2Q9Y261 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA2Q9Y261 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA2Q9Y261 AC008813.1-201ENST00000536597 885 ntBASIC19.84■□□□□ 0.77
FOXA2Q9Y261 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA2Q9Y261 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA2Q9Y261 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
FOXA2Q9Y261 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC19.83■□□□□ 0.77
FOXA2Q9Y261 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
FOXA2Q9Y261 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC19.83■□□□□ 0.76
FOXA2Q9Y261 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA2Q9Y261 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA2Q9Y261 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA2Q9Y261 RPS2-210ENST00000530225 765 ntTSL 2 BASIC19.82■□□□□ 0.76
FOXA2Q9Y261 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA2Q9Y261 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA2Q9Y261 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA2Q9Y261 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.81■□□□□ 0.76
FOXA2Q9Y261 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
FOXA2Q9Y261 HLA-V-202ENST00000446817 847 ntBASIC19.81■□□□□ 0.76
FOXA2Q9Y261 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
FOXA2Q9Y261 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
FOXA2Q9Y261 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
FOXA2Q9Y261 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
FOXA2Q9Y261 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
FOXA2Q9Y261 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
FOXA2Q9Y261 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
FOXA2Q9Y261 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
FOXA2Q9Y261 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.8■□□□□ 0.76
FOXA2Q9Y261 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.8■□□□□ 0.76
FOXA2Q9Y261 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
FOXA2Q9Y261 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA2Q9Y261 MIR639-201ENST00000384974 98 ntBASIC19.79■□□□□ 0.76
FOXA2Q9Y261 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA2Q9Y261 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA2Q9Y261 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA2Q9Y261 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms