Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC47.71■■■■■ 5.23
SHROOM4Q9ULL8 THA1P-201ENST00000590384 1145 ntBASIC47.71■■■■■ 5.23
SHROOM4Q9ULL8 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC47.7■■■■■ 5.23
SHROOM4Q9ULL8 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC47.7■■■■■ 5.23
SHROOM4Q9ULL8 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC47.69■■■■■ 5.22
SHROOM4Q9ULL8 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC47.68■■■■■ 5.22
SHROOM4Q9ULL8 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC47.67■■■■■ 5.22
SHROOM4Q9ULL8 OR2A1-AS1-204ENST00000470435 602 ntBASIC47.67■■■■■ 5.22
SHROOM4Q9ULL8 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC47.67■■■■■ 5.22
SHROOM4Q9ULL8 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC47.66■■■■■ 5.22
SHROOM4Q9ULL8 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC47.66■■■■■ 5.22
SHROOM4Q9ULL8 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC47.66■■■■■ 5.22
SHROOM4Q9ULL8 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC47.66■■■■■ 5.22
SHROOM4Q9ULL8 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC47.65■■■■■ 5.22
SHROOM4Q9ULL8 AC026202.3-201ENST00000600805 1127 ntBASIC47.65■■■■■ 5.22
SHROOM4Q9ULL8 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC47.65■■■■■ 5.22
SHROOM4Q9ULL8 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC47.64■■■■■ 5.22
SHROOM4Q9ULL8 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC47.64■■■■■ 5.22
SHROOM4Q9ULL8 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC47.64■■■■■ 5.22
SHROOM4Q9ULL8 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC47.64■■■■■ 5.22
SHROOM4Q9ULL8 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC47.63■■■■■ 5.22
SHROOM4Q9ULL8 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC47.62■■■■■ 5.21
SHROOM4Q9ULL8 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC47.62■■■■■ 5.21
SHROOM4Q9ULL8 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC47.61■■■■■ 5.21
SHROOM4Q9ULL8 AC025884.2-201ENST00000553429 711 ntBASIC47.61■■■■■ 5.21
SHROOM4Q9ULL8 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC47.61■■■■■ 5.21
SHROOM4Q9ULL8 BEX3-202ENST00000372634 753 ntTSL 2 BASIC47.6■■■■■ 5.21
SHROOM4Q9ULL8 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC47.6■■■■■ 5.21
SHROOM4Q9ULL8 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC47.59■■■■■ 5.21
SHROOM4Q9ULL8 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC47.59■■■■■ 5.21
SHROOM4Q9ULL8 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC47.57■■■■■ 5.21
SHROOM4Q9ULL8 AC010980.1-201ENST00000587192 1142 ntBASIC47.57■■■■■ 5.21
SHROOM4Q9ULL8 AC103834.1-201ENST00000520383 144 ntBASIC47.56■■■■■ 5.2
SHROOM4Q9ULL8 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC47.56■■■■■ 5.2
SHROOM4Q9ULL8 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC47.56■■■■■ 5.2
SHROOM4Q9ULL8 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC47.56■■■■■ 5.2
SHROOM4Q9ULL8 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC47.55■■■■■ 5.2
SHROOM4Q9ULL8 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC47.55■■■■■ 5.2
SHROOM4Q9ULL8 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC47.55■■■■■ 5.2
SHROOM4Q9ULL8 MIR4508-201ENST00000584178 70 ntBASIC47.55■■■■■ 5.2
SHROOM4Q9ULL8 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC47.55■■■■■ 5.2
SHROOM4Q9ULL8 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC47.55■■■■■ 5.2
SHROOM4Q9ULL8 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC47.54■■■■■ 5.2
SHROOM4Q9ULL8 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC47.54■■■■■ 5.2
SHROOM4Q9ULL8 RAP2CP1-202ENST00000605179 643 ntBASIC47.54■■■■■ 5.2
SHROOM4Q9ULL8 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC47.54■■■■■ 5.2
SHROOM4Q9ULL8 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC47.53■■■■■ 5.2
SHROOM4Q9ULL8 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC47.52■■■■■ 5.2
SHROOM4Q9ULL8 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC47.51■■■■■ 5.2
SHROOM4Q9ULL8 SPCS2P3-201ENST00000500401 656 ntBASIC47.51■■■■■ 5.2
SHROOM4Q9ULL8 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC47.51■■■■■ 5.2
SHROOM4Q9ULL8 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC47.5■■■■■ 5.2
SHROOM4Q9ULL8 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC47.49■■■■■ 5.19
SHROOM4Q9ULL8 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC47.49■■■■■ 5.19
SHROOM4Q9ULL8 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC47.49■■■■■ 5.19
SHROOM4Q9ULL8 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC47.49■■■■■ 5.19
SHROOM4Q9ULL8 MIR935-201ENST00000401179 91 ntBASIC47.48■■■■■ 5.19
SHROOM4Q9ULL8 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC47.48■■■■■ 5.19
SHROOM4Q9ULL8 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC47.47■■■■■ 5.19
SHROOM4Q9ULL8 AL356441.2-201ENST00000443009 864 ntBASIC47.47■■■■■ 5.19
SHROOM4Q9ULL8 KRT8P33-201ENST00000508125 1423 ntBASIC47.47■■■■■ 5.19
SHROOM4Q9ULL8 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC47.47■■■■■ 5.19
SHROOM4Q9ULL8 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC47.46■■■■■ 5.19
SHROOM4Q9ULL8 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC47.46■■■■■ 5.19
SHROOM4Q9ULL8 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC47.46■■■■■ 5.19
SHROOM4Q9ULL8 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC47.46■■■■■ 5.19
SHROOM4Q9ULL8 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC47.46■■■■■ 5.19
SHROOM4Q9ULL8 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC47.45■■■■■ 5.19
SHROOM4Q9ULL8 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC47.44■■■■■ 5.19
SHROOM4Q9ULL8 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC47.43■■■■■ 5.18
SHROOM4Q9ULL8 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC47.42■■■■■ 5.18
SHROOM4Q9ULL8 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC47.42■■■■■ 5.18
SHROOM4Q9ULL8 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC47.42■■■■■ 5.18
SHROOM4Q9ULL8 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC47.41■■■■■ 5.18
SHROOM4Q9ULL8 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC47.41■■■■■ 5.18
SHROOM4Q9ULL8 SMPD5-203ENST00000639008 1464 ntBASIC47.41■■■■■ 5.18
SHROOM4Q9ULL8 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC47.4■■■■■ 5.18
SHROOM4Q9ULL8 LSM7-203ENST00000585409 512 ntTSL 2 BASIC47.4■■■■■ 5.18
SHROOM4Q9ULL8 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC47.4■■■■■ 5.18
SHROOM4Q9ULL8 YBX1P4-201ENST00000392794 808 ntBASIC47.4■■■■■ 5.18
SHROOM4Q9ULL8 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC47.39■■■■■ 5.18
SHROOM4Q9ULL8 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC47.39■■■■■ 5.18
SHROOM4Q9ULL8 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC47.39■■■■■ 5.18
SHROOM4Q9ULL8 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC47.39■■■■■ 5.18
SHROOM4Q9ULL8 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC47.39■■■■■ 5.18
SHROOM4Q9ULL8 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC47.39■■■■■ 5.18
SHROOM4Q9ULL8 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC47.38■■■■■ 5.18
SHROOM4Q9ULL8 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC47.38■■■■■ 5.18
SHROOM4Q9ULL8 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC47.38■■■■■ 5.18
SHROOM4Q9ULL8 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC47.38■■■■■ 5.17
SHROOM4Q9ULL8 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC47.38■■■■■ 5.17
SHROOM4Q9ULL8 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC47.37■■■■■ 5.17
SHROOM4Q9ULL8 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC47.37■■■■■ 5.17
SHROOM4Q9ULL8 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC47.37■■■■■ 5.17
SHROOM4Q9ULL8 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC47.36■■■■■ 5.17
SHROOM4Q9ULL8 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC47.36■■■■■ 5.17
SHROOM4Q9ULL8 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC47.36■■■■■ 5.17
SHROOM4Q9ULL8 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC47.36■■■■■ 5.17
SHROOM4Q9ULL8 PVT1_1.1-201ENST00000615125 194 ntBASIC47.36■■■■■ 5.17
SHROOM4Q9ULL8 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC47.36■■■■■ 5.17
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms