Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Prpf40aQ9R1C7 AC122317.2-201ENSMUST00000218708 1248 ntBASIC24.61■■□□□ 1.53
Prpf40aQ9R1C7 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
Prpf40aQ9R1C7 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Prpf40aQ9R1C7 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
Prpf40aQ9R1C7 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
Prpf40aQ9R1C7 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Prpf40aQ9R1C7 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
Prpf40aQ9R1C7 Gm42699-201ENSMUST00000198104 1657 ntBASIC24.59■■□□□ 1.53
Prpf40aQ9R1C7 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
Prpf40aQ9R1C7 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Prpf40aQ9R1C7 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Prpf40aQ9R1C7 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Prpf40aQ9R1C7 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Prpf40aQ9R1C7 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC24.58■■□□□ 1.53
Prpf40aQ9R1C7 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Prpf40aQ9R1C7 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
Prpf40aQ9R1C7 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Prpf40aQ9R1C7 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Prpf40aQ9R1C7 AC153911.1-201ENSMUST00000220378 758 ntBASIC24.57■■□□□ 1.52
Prpf40aQ9R1C7 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Prpf40aQ9R1C7 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
Prpf40aQ9R1C7 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Prpf40aQ9R1C7 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC24.56■■□□□ 1.52
Prpf40aQ9R1C7 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC24.56■■□□□ 1.52
Prpf40aQ9R1C7 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC24.56■■□□□ 1.52
Prpf40aQ9R1C7 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Prpf40aQ9R1C7 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
Prpf40aQ9R1C7 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
Prpf40aQ9R1C7 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Prpf40aQ9R1C7 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
Prpf40aQ9R1C7 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Prpf40aQ9R1C7 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Prpf40aQ9R1C7 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Prpf40aQ9R1C7 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
Prpf40aQ9R1C7 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Prpf40aQ9R1C7 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Prpf40aQ9R1C7 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Prpf40aQ9R1C7 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Prpf40aQ9R1C7 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Prpf40aQ9R1C7 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Prpf40aQ9R1C7 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
Prpf40aQ9R1C7 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
Prpf40aQ9R1C7 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
Prpf40aQ9R1C7 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Prpf40aQ9R1C7 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Prpf40aQ9R1C7 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Prpf40aQ9R1C7 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Prpf40aQ9R1C7 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Prpf40aQ9R1C7 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Prpf40aQ9R1C7 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC24.51■■□□□ 1.51
Prpf40aQ9R1C7 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
Prpf40aQ9R1C7 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC24.51■■□□□ 1.51
Prpf40aQ9R1C7 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Prpf40aQ9R1C7 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Prpf40aQ9R1C7 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Prpf40aQ9R1C7 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC24.5■■□□□ 1.51
Prpf40aQ9R1C7 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Prpf40aQ9R1C7 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
Prpf40aQ9R1C7 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Prpf40aQ9R1C7 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
Prpf40aQ9R1C7 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
Prpf40aQ9R1C7 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Prpf40aQ9R1C7 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Prpf40aQ9R1C7 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC24.48■■□□□ 1.51
Prpf40aQ9R1C7 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Prpf40aQ9R1C7 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Prpf40aQ9R1C7 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Prpf40aQ9R1C7 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Prpf40aQ9R1C7 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Prpf40aQ9R1C7 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Prpf40aQ9R1C7 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Prpf40aQ9R1C7 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Prpf40aQ9R1C7 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Prpf40aQ9R1C7 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Prpf40aQ9R1C7 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Prpf40aQ9R1C7 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
Prpf40aQ9R1C7 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Prpf40aQ9R1C7 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Prpf40aQ9R1C7 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC24.46■■□□□ 1.51
Prpf40aQ9R1C7 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Prpf40aQ9R1C7 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Prpf40aQ9R1C7 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Prpf40aQ9R1C7 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC24.45■■□□□ 1.5
Prpf40aQ9R1C7 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Prpf40aQ9R1C7 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC24.44■■□□□ 1.5
Prpf40aQ9R1C7 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Prpf40aQ9R1C7 Terc-201ENSMUST00000082862 423 ntBASIC24.44■■□□□ 1.5
Prpf40aQ9R1C7 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Prpf40aQ9R1C7 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Prpf40aQ9R1C7 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Prpf40aQ9R1C7 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC24.43■■□□□ 1.5
Prpf40aQ9R1C7 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Prpf40aQ9R1C7 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Prpf40aQ9R1C7 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
Prpf40aQ9R1C7 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Prpf40aQ9R1C7 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
Prpf40aQ9R1C7 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Prpf40aQ9R1C7 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
Prpf40aQ9R1C7 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms