Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC31.89■■■□□ 2.7
USP42Q9H9J4 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC31.88■■■□□ 2.69
USP42Q9H9J4 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
USP42Q9H9J4 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC31.88■■■□□ 2.69
USP42Q9H9J4 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC31.88■■■□□ 2.69
USP42Q9H9J4 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
USP42Q9H9J4 AL139393.2-201ENST00000608721 2025 ntBASIC31.87■■■□□ 2.69
USP42Q9H9J4 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC31.87■■■□□ 2.69
USP42Q9H9J4 AC100797.4-201ENST00000631653 1827 ntBASIC31.87■■■□□ 2.69
USP42Q9H9J4 RP9P-202ENST00000450133 1212 ntBASIC31.86■■■□□ 2.69
USP42Q9H9J4 SPCS2P3-201ENST00000500401 656 ntBASIC31.86■■■□□ 2.69
USP42Q9H9J4 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC31.86■■■□□ 2.69
USP42Q9H9J4 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC31.86■■■□□ 2.69
USP42Q9H9J4 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
USP42Q9H9J4 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC31.85■■■□□ 2.69
USP42Q9H9J4 RAP2CP1-202ENST00000605179 643 ntBASIC31.85■■■□□ 2.69
USP42Q9H9J4 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
USP42Q9H9J4 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC31.84■■■□□ 2.69
USP42Q9H9J4 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC31.84■■■□□ 2.69
USP42Q9H9J4 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
USP42Q9H9J4 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC31.84■■■□□ 2.69
USP42Q9H9J4 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC31.84■■■□□ 2.69
USP42Q9H9J4 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
USP42Q9H9J4 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
USP42Q9H9J4 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC31.83■■■□□ 2.69
USP42Q9H9J4 AC093536.1-201ENST00000569153 554 ntBASIC31.83■■■□□ 2.69
USP42Q9H9J4 AC010980.1-201ENST00000587192 1142 ntBASIC31.82■■■□□ 2.68
USP42Q9H9J4 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
USP42Q9H9J4 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31.82■■■□□ 2.68
USP42Q9H9J4 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.81■■■□□ 2.68
USP42Q9H9J4 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC31.8■■■□□ 2.68
USP42Q9H9J4 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC31.8■■■□□ 2.68
USP42Q9H9J4 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
USP42Q9H9J4 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
USP42Q9H9J4 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC31.79■■■□□ 2.68
USP42Q9H9J4 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC31.79■■■□□ 2.68
USP42Q9H9J4 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC31.79■■■□□ 2.68
USP42Q9H9J4 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
USP42Q9H9J4 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC31.78■■■□□ 2.68
USP42Q9H9J4 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC31.78■■■□□ 2.68
USP42Q9H9J4 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
USP42Q9H9J4 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
USP42Q9H9J4 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC31.77■■■□□ 2.68
USP42Q9H9J4 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
USP42Q9H9J4 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC31.77■■■□□ 2.68
USP42Q9H9J4 AC139426.1-201ENST00000568218 2529 ntBASIC31.77■■■□□ 2.68
USP42Q9H9J4 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
USP42Q9H9J4 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
USP42Q9H9J4 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC31.76■■■□□ 2.68
USP42Q9H9J4 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC31.76■■■□□ 2.67
USP42Q9H9J4 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC31.75■■■□□ 2.67
USP42Q9H9J4 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC31.75■■■□□ 2.67
USP42Q9H9J4 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC31.75■■■□□ 2.67
USP42Q9H9J4 BHLHE23-202ENST00000612929 1109 ntBASIC31.75■■■□□ 2.67
USP42Q9H9J4 AC074183.2-201ENST00000623112 922 ntBASIC31.75■■■□□ 2.67
USP42Q9H9J4 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
USP42Q9H9J4 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP42Q9H9J4 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP42Q9H9J4 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP42Q9H9J4 KRT8P33-201ENST00000508125 1423 ntBASIC31.75■■■□□ 2.67
USP42Q9H9J4 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC31.75■■■□□ 2.67
USP42Q9H9J4 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP42Q9H9J4 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC31.74■■■□□ 2.67
USP42Q9H9J4 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC31.74■■■□□ 2.67
USP42Q9H9J4 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC31.74■■■□□ 2.67
USP42Q9H9J4 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
USP42Q9H9J4 AC009299.2-201ENST00000482477 511 ntBASIC31.74■■■□□ 2.67
USP42Q9H9J4 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
USP42Q9H9J4 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
USP42Q9H9J4 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
USP42Q9H9J4 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
USP42Q9H9J4 BEX3-202ENST00000372634 753 ntTSL 2 BASIC31.73■■■□□ 2.67
USP42Q9H9J4 AL592295.1-201ENST00000400984 884 ntBASIC31.73■■■□□ 2.67
USP42Q9H9J4 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
USP42Q9H9J4 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC31.72■■■□□ 2.67
USP42Q9H9J4 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC31.72■■■□□ 2.67
USP42Q9H9J4 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
USP42Q9H9J4 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC31.71■■■□□ 2.67
USP42Q9H9J4 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.71■■■□□ 2.67
USP42Q9H9J4 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC31.71■■■□□ 2.67
USP42Q9H9J4 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
USP42Q9H9J4 AC103834.1-201ENST00000520383 144 ntBASIC31.71■■■□□ 2.67
USP42Q9H9J4 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC31.71■■■□□ 2.67
USP42Q9H9J4 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
USP42Q9H9J4 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC31.7■■■□□ 2.67
USP42Q9H9J4 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC31.7■■■□□ 2.67
USP42Q9H9J4 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC31.7■■■□□ 2.66
USP42Q9H9J4 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC31.7■■■□□ 2.66
USP42Q9H9J4 PFN2-211ENST00000489155 636 ntTSL 4 BASIC31.7■■■□□ 2.66
USP42Q9H9J4 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC31.7■■■□□ 2.66
USP42Q9H9J4 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC31.69■■■□□ 2.66
USP42Q9H9J4 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC31.69■■■□□ 2.66
USP42Q9H9J4 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
USP42Q9H9J4 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
USP42Q9H9J4 MIR6765-201ENST00000614092 87 ntBASIC31.69■■■□□ 2.66
USP42Q9H9J4 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
USP42Q9H9J4 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
USP42Q9H9J4 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
USP42Q9H9J4 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
USP42Q9H9J4 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms